Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3166 and Atu3167 overlap by 4 nucleotides Atu3167 and Atu3168 are separated by 123 nucleotides
Atu3166: Atu3166 - fructokinase, at 175,837 to 176,826
Atu3166
Atu3167: Atu3167 - tagatose 6-phosphate kinase, at 176,823 to 178,100
Atu3167
Atu3168: Atu3168 - sorbitol/mannitol ABC transporter permease, at 178,224 to 179,096
Atu3168
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 175.828 kb on - strand at 175.828 kb on - strand at 175.830 kb on - strand at 175.833 kb on + strand at 175.855 kb on - strand at 175.908 kb on + strand at 176.072 kb on - strand, within Atu3166 at 176.107 kb on + strand, within Atu3166 at 176.271 kb on - strand, within Atu3166 at 176.356 kb on - strand, within Atu3166 at 176.365 kb on - strand, within Atu3166 at 176.365 kb on - strand, within Atu3166 at 176.380 kb on + strand, within Atu3166 at 176.380 kb on + strand, within Atu3166 at 176.399 kb on - strand, within Atu3166 at 176.420 kb on - strand, within Atu3166 at 176.566 kb on + strand, within Atu3166 at 176.581 kb on + strand, within Atu3166 at 176.614 kb on - strand, within Atu3166 at 176.665 kb on - strand, within Atu3166 at 176.707 kb on + strand, within Atu3166 at 176.750 kb on + strand at 176.883 kb on + strand at 176.888 kb on + strand at 176.893 kb on + strand at 176.893 kb on + strand at 176.893 kb on + strand at 176.905 kb on + strand at 176.905 kb on + strand at 176.905 kb on + strand at 176.906 kb on - strand at 176.913 kb on - strand at 176.971 kb on + strand, within Atu3167 at 176.998 kb on - strand, within Atu3167 at 176.998 kb on - strand, within Atu3167 at 177.015 kb on - strand, within Atu3167 at 177.043 kb on - strand, within Atu3167 at 177.063 kb on - strand, within Atu3167 at 177.083 kb on - strand, within Atu3167 at 177.112 kb on - strand, within Atu3167 at 177.161 kb on + strand, within Atu3167 at 177.176 kb on - strand, within Atu3167 at 177.178 kb on + strand, within Atu3167 at 177.283 kb on - strand, within Atu3167 at 177.377 kb on + strand, within Atu3167 at 177.377 kb on + strand, within Atu3167 at 177.378 kb on - strand, within Atu3167 at 177.385 kb on - strand, within Atu3167 at 177.385 kb on - strand, within Atu3167 at 177.421 kb on + strand, within Atu3167 at 177.460 kb on + strand, within Atu3167 at 177.468 kb on - strand, within Atu3167 at 177.477 kb on - strand, within Atu3167 at 177.628 kb on + strand, within Atu3167 at 177.794 kb on - strand, within Atu3167 at 177.827 kb on - strand, within Atu3167 at 177.828 kb on - strand, within Atu3167 at 177.885 kb on + strand, within Atu3167 at 177.932 kb on + strand, within Atu3167 at 177.940 kb on - strand, within Atu3167 at 178.031 kb on + strand at 178.031 kb on + strand at 178.089 kb on + strand at 178.246 kb on + strand at 178.254 kb on - strand at 178.256 kb on + strand at 178.264 kb on - strand at 178.297 kb on - strand at 178.359 kb on + strand, within Atu3168 at 178.390 kb on - strand, within Atu3168 at 178.417 kb on + strand, within Atu3168 at 178.735 kb on + strand, within Atu3168 at 178.737 kb on - strand, within Atu3168 at 178.737 kb on - strand, within Atu3168 at 178.743 kb on - strand, within Atu3168 at 178.796 kb on - strand, within Atu3168
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 175,828 - -1.6 175,828 - +1.1 175,830 - -0.1 175,833 + +0.2 175,855 - -0.3 175,908 + -0.1 176,072 - Atu3166 0.24 -2.5 176,107 + Atu3166 0.27 -1.1 176,271 - Atu3166 0.44 +0.7 176,356 - Atu3166 0.52 -0.7 176,365 - Atu3166 0.53 -2.1 176,365 - Atu3166 0.53 +0.3 176,380 + Atu3166 0.55 -2.0 176,380 + Atu3166 0.55 -2.1 176,399 - Atu3166 0.57 +1.3 176,420 - Atu3166 0.59 +0.2 176,566 + Atu3166 0.74 -0.2 176,581 + Atu3166 0.75 +0.4 176,614 - Atu3166 0.78 +0.8 176,665 - Atu3166 0.84 +0.3 176,707 + Atu3166 0.88 +0.5 176,750 + -1.4 176,883 + -0.2 176,888 + +2.7 176,893 + +1.3 176,893 + +2.0 176,893 + +0.3 176,905 + +3.3 176,905 + +0.0 176,905 + -1.3 176,906 - +1.3 176,913 - +1.0 176,971 + Atu3167 0.12 -1.9 176,998 - Atu3167 0.14 +0.1 176,998 - Atu3167 0.14 -0.1 177,015 - Atu3167 0.15 +1.2 177,043 - Atu3167 0.17 -1.3 177,063 - Atu3167 0.19 +0.0 177,083 - Atu3167 0.20 +1.0 177,112 - Atu3167 0.23 +0.2 177,161 + Atu3167 0.26 +0.1 177,176 - Atu3167 0.28 +0.6 177,178 + Atu3167 0.28 -1.7 177,283 - Atu3167 0.36 -1.1 177,377 + Atu3167 0.43 +0.4 177,377 + Atu3167 0.43 +0.1 177,378 - Atu3167 0.43 -1.0 177,385 - Atu3167 0.44 -0.7 177,385 - Atu3167 0.44 -0.3 177,421 + Atu3167 0.47 +0.0 177,460 + Atu3167 0.50 +1.0 177,468 - Atu3167 0.50 +1.3 177,477 - Atu3167 0.51 -0.5 177,628 + Atu3167 0.63 -0.5 177,794 - Atu3167 0.76 +0.6 177,827 - Atu3167 0.79 -1.2 177,828 - Atu3167 0.79 +0.1 177,885 + Atu3167 0.83 +0.1 177,932 + Atu3167 0.87 -0.5 177,940 - Atu3167 0.87 -1.7 178,031 + -0.3 178,031 + -1.7 178,089 + -0.1 178,246 + -1.1 178,254 - +0.6 178,256 + -0.1 178,264 - -3.0 178,297 - +0.2 178,359 + Atu3168 0.15 -0.2 178,390 - Atu3168 0.19 -0.5 178,417 + Atu3168 0.22 -1.1 178,735 + Atu3168 0.59 +0.9 178,737 - Atu3168 0.59 +0.4 178,737 - Atu3168 0.59 -0.5 178,743 - Atu3168 0.59 -2.2 178,796 - Atu3168 0.66 -0.6
Or see this region's nucleotide sequence