Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3148 and Atu3149 are separated by 9 nucleotides Atu3149 and Atu3150 overlap by 4 nucleotides
Atu3148: Atu3148 - sugar ABC transporter ATPase, at 156,393 to 157,478
Atu3148
Atu3149: Atu3149 - sugar ABC transporter permease, at 157,488 to 158,324
Atu3149
Atu3150: Atu3150 - sugar ABC transporter permease, at 158,321 to 159,181
Atu3150
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 156.536 kb on - strand, within Atu3148 at 156.536 kb on - strand, within Atu3148 at 156.546 kb on - strand, within Atu3148 at 156.625 kb on - strand, within Atu3148 at 156.665 kb on + strand, within Atu3148 at 156.678 kb on + strand, within Atu3148 at 156.895 kb on + strand, within Atu3148 at 156.901 kb on - strand, within Atu3148 at 156.901 kb on - strand, within Atu3148 at 156.925 kb on + strand, within Atu3148 at 157.100 kb on - strand, within Atu3148 at 157.113 kb on - strand, within Atu3148 at 157.156 kb on + strand, within Atu3148 at 157.164 kb on - strand, within Atu3148 at 157.164 kb on - strand, within Atu3148 at 157.164 kb on - strand, within Atu3148 at 157.395 kb on + strand at 157.485 kb on + strand at 157.512 kb on - strand at 157.574 kb on - strand, within Atu3149 at 157.574 kb on - strand, within Atu3149 at 157.574 kb on - strand, within Atu3149 at 157.579 kb on - strand, within Atu3149 at 157.579 kb on - strand, within Atu3149 at 157.603 kb on + strand, within Atu3149 at 157.632 kb on + strand, within Atu3149 at 157.640 kb on - strand, within Atu3149 at 157.789 kb on + strand, within Atu3149 at 157.839 kb on - strand, within Atu3149 at 157.872 kb on - strand, within Atu3149 at 157.965 kb on - strand, within Atu3149 at 157.975 kb on - strand, within Atu3149 at 158.071 kb on + strand, within Atu3149 at 158.220 kb on - strand, within Atu3149 at 158.342 kb on - strand at 158.372 kb on - strand at 158.455 kb on - strand, within Atu3150 at 158.562 kb on + strand, within Atu3150 at 158.562 kb on + strand, within Atu3150 at 158.580 kb on - strand, within Atu3150 at 158.687 kb on - strand, within Atu3150 at 158.778 kb on + strand, within Atu3150 at 158.783 kb on - strand, within Atu3150 at 158.925 kb on + strand, within Atu3150 at 159.007 kb on - strand, within Atu3150 at 159.057 kb on + strand, within Atu3150 at 159.111 kb on + strand at 159.119 kb on - strand at 159.253 kb on - strand at 159.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 156,536 - Atu3148 0.13 +0.5 156,536 - Atu3148 0.13 -1.4 156,546 - Atu3148 0.14 -1.8 156,625 - Atu3148 0.21 +1.1 156,665 + Atu3148 0.25 +2.3 156,678 + Atu3148 0.26 +0.4 156,895 + Atu3148 0.46 -0.0 156,901 - Atu3148 0.47 -0.0 156,901 - Atu3148 0.47 -1.1 156,925 + Atu3148 0.49 -1.3 157,100 - Atu3148 0.65 +0.9 157,113 - Atu3148 0.66 -1.5 157,156 + Atu3148 0.70 +1.7 157,164 - Atu3148 0.71 +0.9 157,164 - Atu3148 0.71 +1.3 157,164 - Atu3148 0.71 -0.1 157,395 + +1.5 157,485 + +3.2 157,512 - +0.9 157,574 - Atu3149 0.10 -0.7 157,574 - Atu3149 0.10 -1.6 157,574 - Atu3149 0.10 +2.2 157,579 - Atu3149 0.11 -0.7 157,579 - Atu3149 0.11 +0.2 157,603 + Atu3149 0.14 +1.0 157,632 + Atu3149 0.17 -2.2 157,640 - Atu3149 0.18 -0.6 157,789 + Atu3149 0.36 -0.2 157,839 - Atu3149 0.42 -2.1 157,872 - Atu3149 0.46 -0.3 157,965 - Atu3149 0.57 -0.4 157,975 - Atu3149 0.58 -0.6 158,071 + Atu3149 0.70 -0.1 158,220 - Atu3149 0.87 -0.4 158,342 - -0.9 158,372 - -0.2 158,455 - Atu3150 0.16 -0.0 158,562 + Atu3150 0.28 +1.1 158,562 + Atu3150 0.28 -1.8 158,580 - Atu3150 0.30 +0.1 158,687 - Atu3150 0.43 +0.5 158,778 + Atu3150 0.53 -1.7 158,783 - Atu3150 0.54 +1.3 158,925 + Atu3150 0.70 -0.2 159,007 - Atu3150 0.80 -0.9 159,057 + Atu3150 0.85 -0.4 159,111 + +0.7 159,119 - +1.1 159,253 - -0.8 159,285 - +0.5
Or see this region's nucleotide sequence