Strain Fitness in Agrobacterium fabrum C58 around Atu1704

Experiment: AgroPhage_D10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1703 and Atu1704 are separated by 99 nucleotidesAtu1704 and Atu1705 overlap by 4 nucleotidesAtu1705 and Atu1706 are separated by 53 nucleotides Atu1703: Atu1703 - seryl-tRNA synthetase, at 1,688,355 to 1,689,638 Atu1703 Atu1704: Atu1704 - SEC-independent protein translocase protein, at 1,689,738 to 1,690,541 Atu1704 Atu1705: Atu1705 - SEC-independent protein translocase protein, at 1,690,538 to 1,691,278 Atu1705 Atu1706: Atu1706 - SEC-independent protein translocase protein, at 1,691,332 to 1,691,544 Atu1706 Position (kb) 1689 1690 1691Strain fitness (log2 ratio) -1 0 1 2 3at 1690.666 kb on - strand, within Atu1705at 1690.702 kb on - strand, within Atu1705at 1690.784 kb on - strand, within Atu1705at 1690.837 kb on - strand, within Atu1705at 1690.837 kb on - strand, within Atu1705at 1690.961 kb on - strand, within Atu1705at 1691.284 kb on - strandat 1691.284 kb on - strandat 1691.295 kb on + strandat 1691.296 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_D10
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1,690,666 - Atu1705 0.17 +0.7
1,690,702 - Atu1705 0.22 +1.3
1,690,784 - Atu1705 0.33 +0.1
1,690,837 - Atu1705 0.40 +2.9
1,690,837 - Atu1705 0.40 -0.5
1,690,961 - Atu1705 0.57 +0.9
1,691,284 - +0.5
1,691,284 - -0.8
1,691,295 + -0.4
1,691,296 - +1.0

Or see this region's nucleotide sequence