Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0781 and Atu0782 are separated by 106 nucleotides Atu0782 and Atu0783 are separated by 48 nucleotides Atu0783 and Atu0784 are separated by 178 nucleotides
Atu0781: Atu0781 - hypothetical protein, at 777,258 to 777,863
Atu0781
Atu0782: Atu0782 - hypothetical protein, at 777,970 to 778,161
Atu0782
Atu0783: Atu0783 - hypothetical protein, at 778,210 to 779,415
Atu0783
Atu0784: Atu0784 - hypothetical protein, at 779,594 to 782,509
Atu0784
Position (kb) 778
779
780 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 777.371 kb on - strand, within Atu0781 at 777.483 kb on - strand, within Atu0781 at 777.488 kb on + strand, within Atu0781 at 777.623 kb on + strand, within Atu0781 at 777.691 kb on - strand, within Atu0781 at 777.780 kb on + strand, within Atu0781 at 777.781 kb on + strand, within Atu0781 at 777.788 kb on - strand, within Atu0781 at 777.837 kb on - strand at 777.837 kb on - strand at 778.102 kb on + strand, within Atu0782 at 778.102 kb on + strand, within Atu0782 at 778.110 kb on - strand, within Atu0782 at 778.110 kb on - strand, within Atu0782 at 778.122 kb on + strand, within Atu0782 at 778.193 kb on - strand at 778.252 kb on - strand at 778.252 kb on - strand at 778.294 kb on + strand at 778.302 kb on - strand at 778.304 kb on + strand at 778.343 kb on + strand, within Atu0783 at 778.403 kb on - strand, within Atu0783 at 778.458 kb on - strand, within Atu0783 at 778.497 kb on - strand, within Atu0783 at 778.519 kb on + strand, within Atu0783 at 778.631 kb on + strand, within Atu0783 at 778.691 kb on - strand, within Atu0783 at 778.705 kb on + strand, within Atu0783 at 778.821 kb on + strand, within Atu0783 at 779.067 kb on - strand, within Atu0783 at 779.130 kb on + strand, within Atu0783 at 779.201 kb on + strand, within Atu0783 at 779.283 kb on + strand, within Atu0783 at 779.304 kb on + strand at 779.304 kb on + strand at 779.312 kb on - strand at 779.446 kb on - strand at 779.486 kb on - strand at 779.538 kb on + strand at 779.583 kb on - strand at 779.651 kb on + strand at 779.792 kb on - strand at 779.969 kb on - strand, within Atu0784 at 780.201 kb on - strand, within Atu0784 at 780.205 kb on + strand, within Atu0784 at 780.326 kb on + strand, within Atu0784
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 777,371 - Atu0781 0.19 -1.9 777,483 - Atu0781 0.37 +0.6 777,488 + Atu0781 0.38 +0.3 777,623 + Atu0781 0.60 -0.2 777,691 - Atu0781 0.71 -1.2 777,780 + Atu0781 0.86 -0.5 777,781 + Atu0781 0.86 +0.3 777,788 - Atu0781 0.87 -0.7 777,837 - -1.8 777,837 - +0.7 778,102 + Atu0782 0.69 -1.3 778,102 + Atu0782 0.69 -0.5 778,110 - Atu0782 0.73 -1.0 778,110 - Atu0782 0.73 -1.4 778,122 + Atu0782 0.79 -0.3 778,193 - +1.1 778,252 - +0.5 778,252 - -0.6 778,294 + +0.0 778,302 - -0.2 778,304 + +0.6 778,343 + Atu0783 0.11 +1.4 778,403 - Atu0783 0.16 +0.7 778,458 - Atu0783 0.21 -1.4 778,497 - Atu0783 0.24 +1.1 778,519 + Atu0783 0.26 -0.9 778,631 + Atu0783 0.35 -0.6 778,691 - Atu0783 0.40 +0.7 778,705 + Atu0783 0.41 -0.1 778,821 + Atu0783 0.51 -0.1 779,067 - Atu0783 0.71 -0.3 779,130 + Atu0783 0.76 -1.2 779,201 + Atu0783 0.82 +0.5 779,283 + Atu0783 0.89 -0.8 779,304 + -0.8 779,304 + +1.8 779,312 - -0.7 779,446 - -2.1 779,486 - +1.1 779,538 + +0.8 779,583 - -0.3 779,651 + +3.6 779,792 - +2.9 779,969 - Atu0784 0.13 +2.9 780,201 - Atu0784 0.21 +3.8 780,205 + Atu0784 0.21 +2.3 780,326 + Atu0784 0.25 +2.7
Or see this region's nucleotide sequence