Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0733 and Atu0734 are separated by 48 nucleotides Atu0734 and Atu0735 are separated by 208 nucleotides Atu0735 and Atu0736 overlap by 4 nucleotides
Atu0733: Atu0733 - enoyl-CoA hydratase/isomerase, at 732,951 to 733,709
Atu0733
Atu0734: Atu0734 - hypothetical protein, at 733,758 to 734,114
Atu0734
Atu0735: Atu0735 - RNA methyltransferase, at 734,323 to 735,573
Atu0735
Atu0736: Atu0736 - hemolysin, at 735,570 to 736,322
Atu0736
Position (kb) 734
735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 733.348 kb on - strand, within Atu0733 at 733.360 kb on + strand, within Atu0733 at 733.384 kb on + strand, within Atu0733 at 733.384 kb on + strand, within Atu0733 at 733.384 kb on + strand, within Atu0733 at 733.426 kb on + strand, within Atu0733 at 733.548 kb on - strand, within Atu0733 at 733.569 kb on + strand, within Atu0733 at 733.569 kb on + strand, within Atu0733 at 733.618 kb on - strand, within Atu0733 at 733.659 kb on + strand at 733.666 kb on + strand at 733.666 kb on - strand at 733.721 kb on + strand at 733.758 kb on + strand at 733.765 kb on + strand at 733.766 kb on - strand at 733.773 kb on - strand at 733.775 kb on + strand at 733.781 kb on - strand at 733.827 kb on + strand, within Atu0734 at 733.866 kb on + strand, within Atu0734 at 733.910 kb on + strand, within Atu0734 at 733.918 kb on - strand, within Atu0734 at 733.995 kb on + strand, within Atu0734 at 734.030 kb on - strand, within Atu0734 at 734.089 kb on - strand at 734.264 kb on - strand at 734.272 kb on + strand at 734.280 kb on - strand at 734.470 kb on + strand, within Atu0735 at 734.597 kb on - strand, within Atu0735 at 734.613 kb on + strand, within Atu0735 at 734.613 kb on + strand, within Atu0735 at 734.621 kb on - strand, within Atu0735 at 734.653 kb on + strand, within Atu0735 at 734.661 kb on - strand, within Atu0735 at 734.729 kb on + strand, within Atu0735 at 734.737 kb on - strand, within Atu0735 at 734.774 kb on + strand, within Atu0735 at 735.164 kb on - strand, within Atu0735 at 735.232 kb on + strand, within Atu0735 at 735.307 kb on + strand, within Atu0735 at 735.400 kb on - strand, within Atu0735 at 735.439 kb on - strand, within Atu0735 at 735.443 kb on + strand, within Atu0735 at 735.443 kb on + strand, within Atu0735 at 735.443 kb on + strand, within Atu0735 at 735.444 kb on - strand, within Atu0735 at 735.451 kb on - strand at 735.488 kb on + strand at 735.514 kb on + strand at 735.516 kb on + strand at 735.576 kb on - strand at 735.640 kb on - strand at 735.717 kb on + strand, within Atu0736 at 735.841 kb on + strand, within Atu0736 at 735.919 kb on - strand, within Atu0736 at 735.920 kb on + strand, within Atu0736 at 735.963 kb on + strand, within Atu0736 at 735.988 kb on - strand, within Atu0736 at 736.046 kb on - strand, within Atu0736 at 736.079 kb on - strand, within Atu0736 at 736.105 kb on + strand, within Atu0736 at 736.110 kb on - strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.137 kb on - strand, within Atu0736 at 736.137 kb on - strand, within Atu0736 at 736.137 kb on - strand, within Atu0736 at 736.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 733,348 - Atu0733 0.52 -0.0 733,360 + Atu0733 0.54 -1.6 733,384 + Atu0733 0.57 -0.2 733,384 + Atu0733 0.57 +0.6 733,384 + Atu0733 0.57 -1.4 733,426 + Atu0733 0.63 -0.9 733,548 - Atu0733 0.79 +0.8 733,569 + Atu0733 0.81 -0.7 733,569 + Atu0733 0.81 +0.2 733,618 - Atu0733 0.88 -0.4 733,659 + +0.5 733,666 + +3.9 733,666 - +0.5 733,721 + -2.0 733,758 + -0.2 733,765 + -0.0 733,766 - +0.3 733,773 - +0.7 733,775 + +0.5 733,781 - -1.7 733,827 + Atu0734 0.19 -0.8 733,866 + Atu0734 0.30 -0.2 733,910 + Atu0734 0.43 -2.5 733,918 - Atu0734 0.45 -0.7 733,995 + Atu0734 0.66 +0.2 734,030 - Atu0734 0.76 -0.6 734,089 - -0.1 734,264 - -0.3 734,272 + -0.3 734,280 - +0.1 734,470 + Atu0735 0.12 -1.1 734,597 - Atu0735 0.22 +2.9 734,613 + Atu0735 0.23 +0.1 734,613 + Atu0735 0.23 -0.5 734,621 - Atu0735 0.24 +0.4 734,653 + Atu0735 0.26 -0.1 734,661 - Atu0735 0.27 +0.3 734,729 + Atu0735 0.32 +1.0 734,737 - Atu0735 0.33 -2.4 734,774 + Atu0735 0.36 -0.3 735,164 - Atu0735 0.67 +0.7 735,232 + Atu0735 0.73 -0.1 735,307 + Atu0735 0.79 -0.3 735,400 - Atu0735 0.86 -0.2 735,439 - Atu0735 0.89 -3.3 735,443 + Atu0735 0.90 -1.4 735,443 + Atu0735 0.90 -2.0 735,443 + Atu0735 0.90 +0.1 735,444 - Atu0735 0.90 -0.6 735,451 - +1.6 735,488 + +0.9 735,514 + -0.7 735,516 + -0.7 735,576 - +2.9 735,640 - +1.4 735,717 + Atu0736 0.20 +1.3 735,841 + Atu0736 0.36 -2.5 735,919 - Atu0736 0.46 -0.2 735,920 + Atu0736 0.46 -0.3 735,963 + Atu0736 0.52 -0.6 735,988 - Atu0736 0.56 +1.3 736,046 - Atu0736 0.63 -0.4 736,079 - Atu0736 0.68 +2.5 736,105 + Atu0736 0.71 -1.7 736,110 - Atu0736 0.72 +0.5 736,129 + Atu0736 0.74 -0.5 736,129 + Atu0736 0.74 +1.5 736,129 + Atu0736 0.74 +0.5 736,129 + Atu0736 0.74 -0.7 736,129 + Atu0736 0.74 -0.9 736,137 - Atu0736 0.75 -1.2 736,137 - Atu0736 0.75 +1.2 736,137 - Atu0736 0.75 -0.8 736,461 - +2.2
Or see this region's nucleotide sequence