Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0654 and Atu8135 are separated by 202 nucleotides Atu8135 and Atu0656 are separated by 172 nucleotides Atu0656 and Atu0657 are separated by 118 nucleotides Atu0657 and Atu0658 are separated by 36 nucleotides
Atu0654: Atu0654 - transcriptional regulator, LysR family, at 648,223 to 649,173
Atu0654
Atu8135: Atu8135 - hypothetical protein, at 649,376 to 649,669
Atu8135
Atu0656: Atu0656 - glutamate-cysteine ligase, at 649,842 to 651,215
Atu0656
Atu0657: Atu0657 - hypothetical protein, at 651,334 to 652,053
Atu0657
Atu0658: Atu0658 - phosphate permease, at 652,090 to 653,595
Atu0658
Position (kb) 649
650
651
652 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 648.893 kb on - strand, within Atu0654 at 648.999 kb on + strand, within Atu0654 at 649.131 kb on + strand at 649.147 kb on - strand at 649.156 kb on + strand at 649.156 kb on + strand at 649.164 kb on - strand at 649.268 kb on + strand at 649.311 kb on - strand at 649.349 kb on - strand at 649.454 kb on - strand, within Atu8135 at 649.456 kb on - strand, within Atu8135 at 649.563 kb on + strand, within Atu8135 at 649.563 kb on + strand, within Atu8135 at 649.566 kb on - strand, within Atu8135 at 649.570 kb on + strand, within Atu8135 at 649.571 kb on - strand, within Atu8135 at 649.571 kb on - strand, within Atu8135 at 649.616 kb on + strand, within Atu8135 at 649.616 kb on + strand, within Atu8135 at 649.621 kb on + strand, within Atu8135 at 649.688 kb on + strand at 649.755 kb on + strand at 649.774 kb on + strand at 651.207 kb on - strand at 651.340 kb on - strand at 651.420 kb on + strand, within Atu0657 at 651.435 kb on + strand, within Atu0657 at 651.443 kb on - strand, within Atu0657 at 651.453 kb on - strand, within Atu0657 at 651.593 kb on - strand, within Atu0657 at 651.609 kb on + strand, within Atu0657 at 651.708 kb on - strand, within Atu0657 at 651.712 kb on + strand, within Atu0657 at 651.745 kb on - strand, within Atu0657 at 651.747 kb on + strand, within Atu0657 at 651.755 kb on - strand, within Atu0657 at 651.872 kb on - strand, within Atu0657 at 651.872 kb on - strand, within Atu0657 at 651.894 kb on - strand, within Atu0657 at 651.969 kb on - strand, within Atu0657 at 652.115 kb on + strand at 652.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 648,893 - Atu0654 0.70 -0.0 648,999 + Atu0654 0.82 -0.4 649,131 + +0.0 649,147 - -0.2 649,156 + -1.3 649,156 + -1.2 649,164 - -1.4 649,268 + +0.3 649,311 - -0.9 649,349 - -3.0 649,454 - Atu8135 0.27 -0.7 649,456 - Atu8135 0.27 +0.9 649,563 + Atu8135 0.64 +0.2 649,563 + Atu8135 0.64 +0.9 649,566 - Atu8135 0.65 +1.1 649,570 + Atu8135 0.66 +1.4 649,571 - Atu8135 0.66 -0.4 649,571 - Atu8135 0.66 +1.2 649,616 + Atu8135 0.82 +1.3 649,616 + Atu8135 0.82 -0.2 649,621 + Atu8135 0.83 -0.6 649,688 + -0.4 649,755 + +0.4 649,774 + +0.6 651,207 - +1.4 651,340 - +0.5 651,420 + Atu0657 0.12 -0.1 651,435 + Atu0657 0.14 -0.1 651,443 - Atu0657 0.15 +0.8 651,453 - Atu0657 0.17 -0.4 651,593 - Atu0657 0.36 -0.4 651,609 + Atu0657 0.38 -0.9 651,708 - Atu0657 0.52 +0.2 651,712 + Atu0657 0.53 +0.7 651,745 - Atu0657 0.57 -0.4 651,747 + Atu0657 0.57 +0.3 651,755 - Atu0657 0.58 -0.2 651,872 - Atu0657 0.75 -0.1 651,872 - Atu0657 0.75 -1.0 651,894 - Atu0657 0.78 -0.5 651,969 - Atu0657 0.88 +0.3 652,115 + +1.5 652,120 - -1.3
Or see this region's nucleotide sequence