Strain Fitness in Agrobacterium fabrum C58 around Atu0569

Experiment: AgroPhage_D10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0567 and Atu0568 are separated by 279 nucleotidesAtu0568 and Atu0569 overlap by 4 nucleotidesAtu0569 and Atu0570 overlap by 4 nucleotides Atu0567: Atu0567 - flagellin protein FlaD, at 551,215 to 552,507 Atu0567 Atu0568: Atu0568 - hypothetical protein, at 552,787 to 553,443 Atu0568 Atu0569: Atu0569 - flagellar motor protein, PAL/OmpA family, at 553,440 to 554,741 Atu0569 Atu0570: Atu0570 - Chemotaxis protein, at 554,738 to 556,018 Atu0570 Position (kb) 553 554 555Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 552.574 kb on - strandat 552.583 kb on + strandat 552.671 kb on - strandat 552.671 kb on - strandat 552.696 kb on + strandat 552.777 kb on - strandat 552.784 kb on + strandat 552.792 kb on - strandat 552.828 kb on + strandat 552.828 kb on + strandat 552.955 kb on - strand, within Atu0568at 553.035 kb on - strand, within Atu0568at 553.103 kb on + strand, within Atu0568at 553.218 kb on + strand, within Atu0568at 553.226 kb on - strand, within Atu0568at 553.243 kb on - strand, within Atu0568at 553.307 kb on - strand, within Atu0568at 553.307 kb on - strand, within Atu0568at 553.307 kb on - strand, within Atu0568at 553.307 kb on - strand, within Atu0568at 553.377 kb on + strand, within Atu0568at 553.377 kb on + strand, within Atu0568at 553.496 kb on + strandat 553.585 kb on + strand, within Atu0569at 553.595 kb on + strand, within Atu0569at 553.598 kb on - strand, within Atu0569at 553.616 kb on + strand, within Atu0569at 553.648 kb on + strand, within Atu0569at 553.648 kb on + strand, within Atu0569at 553.656 kb on - strand, within Atu0569at 553.766 kb on - strand, within Atu0569at 553.782 kb on + strand, within Atu0569at 553.796 kb on - strand, within Atu0569at 553.805 kb on - strand, within Atu0569at 553.847 kb on + strand, within Atu0569at 553.855 kb on - strand, within Atu0569at 553.892 kb on + strand, within Atu0569at 553.910 kb on + strand, within Atu0569at 554.048 kb on - strand, within Atu0569at 554.088 kb on + strand, within Atu0569at 554.095 kb on - strand, within Atu0569at 554.124 kb on + strand, within Atu0569at 554.212 kb on + strand, within Atu0569at 554.237 kb on + strand, within Atu0569at 554.285 kb on + strand, within Atu0569at 554.286 kb on + strand, within Atu0569at 554.448 kb on + strand, within Atu0569at 554.537 kb on + strand, within Atu0569at 554.544 kb on + strand, within Atu0569at 554.544 kb on + strand, within Atu0569at 554.566 kb on - strand, within Atu0569at 554.600 kb on - strand, within Atu0569at 554.686 kb on - strandat 554.854 kb on - strandat 554.881 kb on + strand, within Atu0570at 554.951 kb on + strand, within Atu0570at 554.951 kb on + strand, within Atu0570at 555.010 kb on + strand, within Atu0570at 555.013 kb on - strand, within Atu0570at 555.042 kb on + strand, within Atu0570at 555.042 kb on + strand, within Atu0570at 555.050 kb on - strand, within Atu0570at 555.104 kb on - strand, within Atu0570at 555.145 kb on + strand, within Atu0570at 555.184 kb on + strand, within Atu0570at 555.192 kb on - strand, within Atu0570at 555.261 kb on + strand, within Atu0570at 555.280 kb on + strand, within Atu0570at 555.340 kb on - strand, within Atu0570at 555.368 kb on + strand, within Atu0570at 555.373 kb on + strand, within Atu0570at 555.383 kb on - strand, within Atu0570at 555.479 kb on + strand, within Atu0570at 555.511 kb on + strand, within Atu0570at 555.511 kb on + strand, within Atu0570at 555.616 kb on + strand, within Atu0570at 555.632 kb on - strand, within Atu0570at 555.663 kb on + strand, within Atu0570at 555.690 kb on + strand, within Atu0570

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_D10
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552,574 - -0.6
552,583 + +2.3
552,671 - +3.9
552,671 - +4.6
552,696 + +5.3
552,777 - +6.2
552,784 + +1.0
552,792 - +5.8
552,828 + +5.4
552,828 + +6.0
552,955 - Atu0568 0.26 +6.5
553,035 - Atu0568 0.38 +5.9
553,103 + Atu0568 0.48 +6.5
553,218 + Atu0568 0.66 +5.9
553,226 - Atu0568 0.67 +6.2
553,243 - Atu0568 0.69 +6.0
553,307 - Atu0568 0.79 +5.7
553,307 - Atu0568 0.79 +6.2
553,307 - Atu0568 0.79 +6.1
553,307 - Atu0568 0.79 +5.8
553,377 + Atu0568 0.90 +6.3
553,377 + Atu0568 0.90 +5.8
553,496 + +6.5
553,585 + Atu0569 0.11 +6.0
553,595 + Atu0569 0.12 +6.1
553,598 - Atu0569 0.12 +6.3
553,616 + Atu0569 0.14 +6.7
553,648 + Atu0569 0.16 +6.3
553,648 + Atu0569 0.16 +6.2
553,656 - Atu0569 0.17 +5.8
553,766 - Atu0569 0.25 +5.8
553,782 + Atu0569 0.26 +5.5
553,796 - Atu0569 0.27 +6.3
553,805 - Atu0569 0.28 +6.2
553,847 + Atu0569 0.31 +7.1
553,855 - Atu0569 0.32 +5.9
553,892 + Atu0569 0.35 +6.4
553,910 + Atu0569 0.36 +5.9
554,048 - Atu0569 0.47 +5.8
554,088 + Atu0569 0.50 +5.7
554,095 - Atu0569 0.50 +6.0
554,124 + Atu0569 0.53 +6.4
554,212 + Atu0569 0.59 +5.6
554,237 + Atu0569 0.61 +5.9
554,285 + Atu0569 0.65 +6.3
554,286 + Atu0569 0.65 +6.2
554,448 + Atu0569 0.77 +6.1
554,537 + Atu0569 0.84 +6.7
554,544 + Atu0569 0.85 +6.0
554,544 + Atu0569 0.85 +5.7
554,566 - Atu0569 0.86 +6.3
554,600 - Atu0569 0.89 +6.4
554,686 - +5.7
554,854 - +4.8
554,881 + Atu0570 0.11 +5.9
554,951 + Atu0570 0.17 +5.9
554,951 + Atu0570 0.17 +6.2
555,010 + Atu0570 0.21 +6.6
555,013 - Atu0570 0.21 +6.1
555,042 + Atu0570 0.24 +5.8
555,042 + Atu0570 0.24 +6.1
555,050 - Atu0570 0.24 +5.7
555,104 - Atu0570 0.29 +6.5
555,145 + Atu0570 0.32 +6.1
555,184 + Atu0570 0.35 +5.9
555,192 - Atu0570 0.35 +6.1
555,261 + Atu0570 0.41 +6.6
555,280 + Atu0570 0.42 +6.4
555,340 - Atu0570 0.47 +6.1
555,368 + Atu0570 0.49 +5.9
555,373 + Atu0570 0.50 +6.4
555,383 - Atu0570 0.50 +6.0
555,479 + Atu0570 0.58 +5.6
555,511 + Atu0570 0.60 +6.0
555,511 + Atu0570 0.60 +6.0
555,616 + Atu0570 0.69 +6.0
555,632 - Atu0570 0.70 +6.1
555,663 + Atu0570 0.72 +7.6
555,690 + Atu0570 0.74 +6.4

Or see this region's nucleotide sequence