Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0564 and Atu0565 are separated by 5 nucleotides Atu0565 and Atu0566 are separated by 80 nucleotides Atu0566 and Atu0567 are separated by 14 nucleotides
Atu0564: Atu0564 - flagellar biosynthetic protein, at 549,382 to 550,464
Atu0564
Atu0565: Atu0565 - hypothetical protein, at 550,470 to 550,907
Atu0565
Atu0566: Atu0566 - hypothetical protein, at 550,988 to 551,200
Atu0566
Atu0567: Atu0567 - flagellin protein FlaD, at 551,215 to 552,507
Atu0567
Position (kb) 550
551 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 549.608 kb on - strand, within Atu0564 at 549.628 kb on - strand, within Atu0564 at 549.650 kb on - strand, within Atu0564 at 549.715 kb on + strand, within Atu0564 at 549.715 kb on + strand, within Atu0564 at 549.803 kb on - strand, within Atu0564 at 549.820 kb on - strand, within Atu0564 at 549.989 kb on - strand, within Atu0564 at 550.034 kb on + strand, within Atu0564 at 550.034 kb on + strand, within Atu0564 at 550.059 kb on + strand, within Atu0564 at 550.075 kb on + strand, within Atu0564 at 550.075 kb on + strand, within Atu0564 at 550.076 kb on + strand, within Atu0564 at 550.092 kb on + strand, within Atu0564 at 550.104 kb on + strand, within Atu0564 at 550.182 kb on + strand, within Atu0564 at 550.203 kb on + strand, within Atu0564 at 550.221 kb on - strand, within Atu0564 at 550.221 kb on - strand, within Atu0564 at 550.272 kb on - strand, within Atu0564 at 550.347 kb on + strand, within Atu0564 at 550.347 kb on + strand, within Atu0564 at 550.400 kb on + strand at 550.402 kb on + strand at 550.468 kb on - strand at 550.486 kb on + strand at 550.486 kb on + strand at 550.486 kb on + strand at 550.505 kb on + strand at 550.585 kb on - strand, within Atu0565 at 550.639 kb on - strand, within Atu0565 at 550.782 kb on - strand, within Atu0565 at 550.848 kb on + strand, within Atu0565 at 550.867 kb on - strand at 550.890 kb on - strand at 550.895 kb on - strand at 550.985 kb on + strand at 551.002 kb on + strand at 551.004 kb on - strand at 551.075 kb on - strand, within Atu0566 at 551.133 kb on - strand, within Atu0566 at 551.232 kb on - strand at 551.241 kb on + strand at 551.283 kb on - strand at 551.293 kb on + strand at 551.368 kb on + strand, within Atu0567 at 551.406 kb on - strand, within Atu0567 at 551.411 kb on + strand, within Atu0567 at 551.441 kb on - strand, within Atu0567 at 551.463 kb on - strand, within Atu0567 at 551.484 kb on + strand, within Atu0567 at 551.484 kb on + strand, within Atu0567 at 551.492 kb on - strand, within Atu0567 at 551.497 kb on - strand, within Atu0567 at 551.515 kb on - strand, within Atu0567 at 551.564 kb on - strand, within Atu0567 at 551.568 kb on + strand, within Atu0567 at 551.622 kb on - strand, within Atu0567 at 551.632 kb on - strand, within Atu0567 at 551.642 kb on - strand, within Atu0567 at 551.739 kb on + strand, within Atu0567 at 551.764 kb on - strand, within Atu0567 at 551.764 kb on - strand, within Atu0567 at 551.764 kb on - strand, within Atu0567 at 551.840 kb on + strand, within Atu0567 at 551.872 kb on + strand, within Atu0567 at 551.889 kb on + strand, within Atu0567 at 551.889 kb on + strand, within Atu0567 at 551.890 kb on - strand, within Atu0567
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 549,608 - Atu0564 0.21 +6.0 549,628 - Atu0564 0.23 +5.5 549,650 - Atu0564 0.25 +6.3 549,715 + Atu0564 0.31 +6.3 549,715 + Atu0564 0.31 +6.6 549,803 - Atu0564 0.39 +6.3 549,820 - Atu0564 0.40 +5.9 549,989 - Atu0564 0.56 +6.2 550,034 + Atu0564 0.60 +6.4 550,034 + Atu0564 0.60 +6.1 550,059 + Atu0564 0.63 +6.1 550,075 + Atu0564 0.64 +6.3 550,075 + Atu0564 0.64 +6.1 550,076 + Atu0564 0.64 +5.5 550,092 + Atu0564 0.66 +6.2 550,104 + Atu0564 0.67 +5.6 550,182 + Atu0564 0.74 +5.8 550,203 + Atu0564 0.76 +6.0 550,221 - Atu0564 0.77 +5.3 550,221 - Atu0564 0.77 +6.1 550,272 - Atu0564 0.82 +5.8 550,347 + Atu0564 0.89 +6.1 550,347 + Atu0564 0.89 +5.8 550,400 + +1.1 550,402 + +3.6 550,468 - -0.3 550,486 + -0.7 550,486 + -0.4 550,486 + -1.2 550,505 + +0.3 550,585 - Atu0565 0.26 -1.2 550,639 - Atu0565 0.39 -1.5 550,782 - Atu0565 0.71 -0.5 550,848 + Atu0565 0.86 +0.2 550,867 - -0.6 550,890 - +1.4 550,895 - -0.9 550,985 + -1.2 551,002 + -1.2 551,004 - +0.3 551,075 - Atu0566 0.41 -0.0 551,133 - Atu0566 0.68 +2.1 551,232 - -0.8 551,241 + +0.1 551,283 - -0.3 551,293 + -1.3 551,368 + Atu0567 0.12 +0.8 551,406 - Atu0567 0.15 -0.2 551,411 + Atu0567 0.15 -1.6 551,441 - Atu0567 0.17 +0.1 551,463 - Atu0567 0.19 +0.2 551,484 + Atu0567 0.21 +1.2 551,484 + Atu0567 0.21 -0.2 551,492 - Atu0567 0.21 -0.8 551,497 - Atu0567 0.22 +1.2 551,515 - Atu0567 0.23 -0.2 551,564 - Atu0567 0.27 -1.0 551,568 + Atu0567 0.27 +0.4 551,622 - Atu0567 0.31 -0.1 551,632 - Atu0567 0.32 -1.5 551,642 - Atu0567 0.33 +0.3 551,739 + Atu0567 0.41 -2.7 551,764 - Atu0567 0.42 -0.0 551,764 - Atu0567 0.42 -0.0 551,764 - Atu0567 0.42 -0.9 551,840 + Atu0567 0.48 -0.1 551,872 + Atu0567 0.51 +0.3 551,889 + Atu0567 0.52 -0.7 551,889 + Atu0567 0.52 +1.2 551,890 - Atu0567 0.52 +0.4
Or see this region's nucleotide sequence