Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0557 and Atu0558 are separated by 11 nucleotides Atu0558 and Atu0559 are separated by 1 nucleotides Atu0559 and Atu0560 are separated by 330 nucleotides
Atu0557: Atu0557 - flagellum-specific ATP synthase, at 542,613 to 544,034
Atu0557
Atu0558: Atu0558 - flagellar basal body rod protein, at 544,046 to 544,780
Atu0558
Atu0559: Atu0559 - hypothetical protein, at 544,782 to 545,417
Atu0559
Atu0560: Atu0560 - flagellar motor protein, at 545,748 to 546,620
Atu0560
Position (kb) 544
545
546 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 543.803 kb on + strand, within Atu0557 at 543.803 kb on + strand, within Atu0557 at 543.926 kb on + strand at 543.945 kb on - strand at 544.145 kb on - strand, within Atu0558 at 544.181 kb on - strand, within Atu0558 at 544.188 kb on + strand, within Atu0558 at 544.191 kb on - strand, within Atu0558 at 544.193 kb on + strand, within Atu0558 at 544.196 kb on - strand, within Atu0558 at 544.201 kb on - strand, within Atu0558 at 544.201 kb on - strand, within Atu0558 at 544.206 kb on - strand, within Atu0558 at 544.296 kb on + strand, within Atu0558 at 544.304 kb on + strand, within Atu0558 at 544.381 kb on + strand, within Atu0558 at 544.484 kb on + strand, within Atu0558 at 544.558 kb on + strand, within Atu0558 at 544.568 kb on + strand, within Atu0558 at 544.568 kb on + strand, within Atu0558 at 544.576 kb on - strand, within Atu0558 at 544.697 kb on - strand, within Atu0558 at 544.754 kb on - strand at 544.777 kb on + strand at 544.823 kb on + strand at 544.832 kb on - strand at 544.890 kb on + strand, within Atu0559 at 544.982 kb on - strand, within Atu0559 at 545.038 kb on - strand, within Atu0559 at 545.145 kb on - strand, within Atu0559 at 545.182 kb on - strand, within Atu0559 at 545.232 kb on + strand, within Atu0559 at 545.289 kb on - strand, within Atu0559 at 545.324 kb on - strand, within Atu0559 at 545.325 kb on + strand, within Atu0559 at 545.325 kb on + strand, within Atu0559 at 545.325 kb on + strand, within Atu0559 at 545.333 kb on - strand, within Atu0559 at 545.348 kb on + strand, within Atu0559 at 545.358 kb on + strand at 545.366 kb on + strand at 545.366 kb on - strand at 545.367 kb on - strand at 545.374 kb on - strand at 545.381 kb on - strand at 545.410 kb on - strand at 545.470 kb on - strand at 545.497 kb on - strand at 545.515 kb on + strand at 545.542 kb on - strand at 545.555 kb on + strand at 545.653 kb on + strand at 545.653 kb on + strand at 545.653 kb on + strand at 545.665 kb on + strand at 545.672 kb on + strand at 545.727 kb on - strand at 545.727 kb on - strand at 545.729 kb on + strand at 545.729 kb on + strand at 545.735 kb on - strand at 545.774 kb on - strand at 545.817 kb on + strand at 545.887 kb on + strand, within Atu0560 at 545.895 kb on - strand, within Atu0560 at 545.904 kb on + strand, within Atu0560 at 545.930 kb on + strand, within Atu0560 at 545.993 kb on + strand, within Atu0560 at 546.016 kb on + strand, within Atu0560 at 546.227 kb on + strand, within Atu0560 at 546.299 kb on + strand, within Atu0560 at 546.299 kb on + strand, within Atu0560 at 546.363 kb on - strand, within Atu0560 at 546.363 kb on - strand, within Atu0560 at 546.377 kb on + strand, within Atu0560 at 546.387 kb on + strand, within Atu0560 at 546.395 kb on - strand, within Atu0560
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 543,803 + Atu0557 0.84 +5.8 543,803 + Atu0557 0.84 +6.0 543,926 + +5.6 543,945 - +5.9 544,145 - Atu0558 0.13 +6.4 544,181 - Atu0558 0.18 +5.7 544,188 + Atu0558 0.19 +6.8 544,191 - Atu0558 0.20 +6.0 544,193 + Atu0558 0.20 +6.1 544,196 - Atu0558 0.20 +7.1 544,201 - Atu0558 0.21 +5.2 544,201 - Atu0558 0.21 +6.4 544,206 - Atu0558 0.22 +6.2 544,296 + Atu0558 0.34 +6.2 544,304 + Atu0558 0.35 +5.1 544,381 + Atu0558 0.46 +6.5 544,484 + Atu0558 0.60 +7.0 544,558 + Atu0558 0.70 +5.9 544,568 + Atu0558 0.71 +6.5 544,568 + Atu0558 0.71 +6.0 544,576 - Atu0558 0.72 +5.9 544,697 - Atu0558 0.89 +5.9 544,754 - +6.0 544,777 + +6.2 544,823 + +5.4 544,832 - +2.5 544,890 + Atu0559 0.17 +5.6 544,982 - Atu0559 0.31 +0.0 545,038 - Atu0559 0.40 +4.0 545,145 - Atu0559 0.57 +2.2 545,182 - Atu0559 0.63 +5.6 545,232 + Atu0559 0.71 +5.5 545,289 - Atu0559 0.80 +5.7 545,324 - Atu0559 0.85 +3.9 545,325 + Atu0559 0.85 +6.0 545,325 + Atu0559 0.85 +5.5 545,325 + Atu0559 0.85 +5.8 545,333 - Atu0559 0.87 +5.9 545,348 + Atu0559 0.89 +6.1 545,358 + +5.9 545,366 + +6.2 545,366 - +2.1 545,367 - +2.6 545,374 - +5.4 545,381 - +5.0 545,410 - +5.4 545,470 - +5.5 545,497 - +5.9 545,515 + +5.4 545,542 - +6.0 545,555 + +5.5 545,653 + -0.0 545,653 + -2.9 545,653 + +0.6 545,665 + +0.4 545,672 + +0.2 545,727 - +6.1 545,727 - +5.8 545,729 + +1.2 545,729 + +3.6 545,735 - +6.3 545,774 - +6.5 545,817 + +6.0 545,887 + Atu0560 0.16 +5.8 545,895 - Atu0560 0.17 +6.0 545,904 + Atu0560 0.18 +5.3 545,930 + Atu0560 0.21 +5.8 545,993 + Atu0560 0.28 +6.5 546,016 + Atu0560 0.31 +5.9 546,227 + Atu0560 0.55 +6.1 546,299 + Atu0560 0.63 +4.9 546,299 + Atu0560 0.63 +5.6 546,363 - Atu0560 0.70 +5.3 546,363 - Atu0560 0.70 +5.0 546,377 + Atu0560 0.72 +6.6 546,387 + Atu0560 0.73 +6.8 546,395 - Atu0560 0.74 +5.9
Or see this region's nucleotide sequence