Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0545 and Atu0546 are separated by 371 nucleotides Atu0546 and Atu0547 overlap by 4 nucleotides Atu0547 and Atu0548 are separated by 26 nucleotides
Atu0545: Atu0545 - flagella associated protein, at 534,488 to 535,408
Atu0545
Atu0546: Atu0546 - flagellar biosynthetic protein, at 535,780 to 536,517
Atu0546
Atu0547: Atu0547 - flagellar protein, at 536,514 to 537,014
Atu0547
Atu0548: Atu0548 - flagellar L-ring protein precursor, at 537,041 to 537,760
Atu0548
Position (kb) 535
536
537 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 534.891 kb on + strand, within Atu0545 at 535.103 kb on + strand, within Atu0545 at 535.182 kb on + strand, within Atu0545 at 535.200 kb on + strand, within Atu0545 at 535.205 kb on + strand, within Atu0545 at 535.208 kb on - strand, within Atu0545 at 535.208 kb on - strand, within Atu0545 at 535.222 kb on - strand, within Atu0545 at 535.291 kb on - strand, within Atu0545 at 535.317 kb on + strand at 535.361 kb on + strand at 535.369 kb on - strand at 535.446 kb on + strand at 535.768 kb on + strand at 535.776 kb on - strand at 535.823 kb on - strand at 535.894 kb on - strand, within Atu0546 at 535.903 kb on + strand, within Atu0546 at 536.025 kb on - strand, within Atu0546 at 536.148 kb on + strand, within Atu0546 at 536.231 kb on - strand, within Atu0546 at 536.239 kb on - strand, within Atu0546 at 536.339 kb on + strand, within Atu0546 at 536.372 kb on + strand, within Atu0546 at 536.380 kb on - strand, within Atu0546 at 536.405 kb on + strand, within Atu0546 at 536.429 kb on + strand, within Atu0546 at 536.543 kb on + strand at 536.543 kb on - strand at 536.685 kb on - strand, within Atu0547 at 536.740 kb on - strand, within Atu0547 at 536.743 kb on + strand, within Atu0547 at 536.743 kb on + strand, within Atu0547 at 536.749 kb on + strand, within Atu0547 at 536.749 kb on + strand, within Atu0547 at 536.757 kb on - strand, within Atu0547 at 536.783 kb on + strand, within Atu0547 at 536.786 kb on - strand, within Atu0547 at 536.791 kb on - strand, within Atu0547 at 536.934 kb on - strand, within Atu0547 at 536.944 kb on - strand, within Atu0547 at 536.944 kb on - strand, within Atu0547 at 536.962 kb on + strand, within Atu0547 at 536.962 kb on + strand, within Atu0547 at 536.969 kb on - strand at 536.975 kb on - strand at 536.992 kb on + strand at 537.015 kb on + strand at 537.016 kb on + strand at 537.021 kb on + strand at 537.024 kb on - strand at 537.048 kb on + strand at 537.058 kb on + strand at 537.058 kb on + strand at 537.233 kb on + strand, within Atu0548 at 537.304 kb on + strand, within Atu0548 at 537.320 kb on + strand, within Atu0548 at 537.327 kb on + strand, within Atu0548 at 537.327 kb on + strand, within Atu0548 at 537.327 kb on + strand, within Atu0548 at 537.327 kb on + strand, within Atu0548 at 537.333 kb on + strand, within Atu0548 at 537.333 kb on + strand, within Atu0548 at 537.335 kb on - strand, within Atu0548 at 537.341 kb on - strand, within Atu0548 at 537.351 kb on - strand, within Atu0548 at 537.422 kb on + strand, within Atu0548 at 537.494 kb on - strand, within Atu0548
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 534,891 + Atu0545 0.44 +0.2 535,103 + Atu0545 0.67 +1.2 535,182 + Atu0545 0.75 +0.5 535,200 + Atu0545 0.77 +0.8 535,205 + Atu0545 0.78 -0.2 535,208 - Atu0545 0.78 +0.7 535,208 - Atu0545 0.78 +0.9 535,222 - Atu0545 0.80 +0.5 535,291 - Atu0545 0.87 +1.1 535,317 + +0.0 535,361 + +1.6 535,369 - +0.1 535,446 + +0.4 535,768 + -1.1 535,776 - +0.8 535,823 - +6.1 535,894 - Atu0546 0.15 +6.3 535,903 + Atu0546 0.17 +5.9 536,025 - Atu0546 0.33 +6.0 536,148 + Atu0546 0.50 +5.8 536,231 - Atu0546 0.61 +4.1 536,239 - Atu0546 0.62 +6.0 536,339 + Atu0546 0.76 +6.2 536,372 + Atu0546 0.80 +5.8 536,380 - Atu0546 0.81 +6.0 536,405 + Atu0546 0.85 +5.9 536,429 + Atu0546 0.88 +6.5 536,543 + +5.7 536,543 - +6.4 536,685 - Atu0547 0.34 +6.0 536,740 - Atu0547 0.45 +5.8 536,743 + Atu0547 0.46 +6.0 536,743 + Atu0547 0.46 +6.8 536,749 + Atu0547 0.47 +5.4 536,749 + Atu0547 0.47 +6.2 536,757 - Atu0547 0.49 +6.1 536,783 + Atu0547 0.54 +5.7 536,786 - Atu0547 0.54 +6.8 536,791 - Atu0547 0.55 +6.2 536,934 - Atu0547 0.84 +6.2 536,944 - Atu0547 0.86 +5.3 536,944 - Atu0547 0.86 +6.1 536,962 + Atu0547 0.89 +5.9 536,962 + Atu0547 0.89 +5.3 536,969 - +6.3 536,975 - +5.5 536,992 + +5.9 537,015 + -1.5 537,016 + +2.8 537,021 + +3.7 537,024 - -0.8 537,048 + +5.4 537,058 + +5.2 537,058 + +7.0 537,233 + Atu0548 0.27 +4.9 537,304 + Atu0548 0.37 +5.6 537,320 + Atu0548 0.39 +5.8 537,327 + Atu0548 0.40 +5.2 537,327 + Atu0548 0.40 +6.4 537,327 + Atu0548 0.40 +6.5 537,327 + Atu0548 0.40 +5.7 537,333 + Atu0548 0.41 +6.3 537,333 + Atu0548 0.41 +5.6 537,335 - Atu0548 0.41 +6.2 537,341 - Atu0548 0.42 +5.8 537,351 - Atu0548 0.43 +5.8 537,422 + Atu0548 0.53 +6.1 537,494 - Atu0548 0.63 +6.6
Or see this region's nucleotide sequence