Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0253 and Atu0254 are separated by 301 nucleotides Atu0254 and Atu0255 are separated by 189 nucleotides Atu0255 and Atu0256 are separated by 40 nucleotides Atu0256 and Atu0257 are separated by 164 nucleotides
Atu0253: Atu0253 - hypothetical protein, at 251,051 to 251,839
Atu0253
Atu0254: Atu0254 - translation initiation factor 3, at 252,141 to 252,563
Atu0254
Atu0255: Atu0255 - 50S ribosomal protein L35, at 252,753 to 252,956
Atu0255
Atu0256: Atu0256 - 50S ribosomal protein L20, at 252,997 to 253,401
Atu0256
Atu0257: Atu0257 - hypothetical protein, at 253,566 to 254,444
Atu0257
Position (kb) 252
253 Strain fitness (log2 ratio) -2
-1
0
1 at 251.801 kb on - strand at 251.839 kb on + strand at 251.847 kb on - strand at 252.593 kb on - strand at 253.537 kb on + strand at 253.639 kb on - strand at 253.661 kb on - strand, within Atu0257 at 253.716 kb on - strand, within Atu0257 at 253.786 kb on - strand, within Atu0257 at 253.798 kb on + strand, within Atu0257 at 253.816 kb on + strand, within Atu0257 at 253.824 kb on - strand, within Atu0257
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 251,801 - +0.1 251,839 + +0.5 251,847 - -1.2 252,593 - -0.2 253,537 + -0.8 253,639 - -2.5 253,661 - Atu0257 0.11 -0.9 253,716 - Atu0257 0.17 -0.0 253,786 - Atu0257 0.25 -1.0 253,798 + Atu0257 0.26 -2.6 253,816 + Atu0257 0.28 -0.7 253,824 - Atu0257 0.29 -1.1
Or see this region's nucleotide sequence