Experiment: AgroPhage_D07
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0939 and Atu0940 overlap by 1 nucleotides Atu0940 and Atu0941 are separated by 97 nucleotides Atu0941 and Atu0942 are separated by 106 nucleotides Atu0942 and Atu0943 are separated by 78 nucleotides Atu0943 and Atu0944 are separated by 68 nucleotides
Atu0939: Atu0939 - PemI protein, at 928,967 to 929,233
Atu0939
Atu0940: Atu0940 - PemK protein, at 929,233 to 929,592
Atu0940
Atu0941: Atu0941 - hypothetical protein, at 929,690 to 929,926
Atu0941
Atu0942: Atu0942 - MFS permease, at 930,033 to 931,415
Atu0942
Atu0943: Atu0943 - hypothetical protein, at 931,494 to 931,667
Atu0943
Atu0944: Atu0944 - sucrose hydrolase, at 931,736 to 933,367
Atu0944
Position (kb) 930
931
932 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 929.162 kb on - strand, within Atu0939 at 929.256 kb on + strand at 929.326 kb on + strand, within Atu0940 at 929.414 kb on + strand, within Atu0940 at 929.477 kb on - strand, within Atu0940 at 929.508 kb on - strand, within Atu0940 at 929.508 kb on - strand, within Atu0940 at 929.597 kb on + strand at 929.598 kb on + strand at 929.598 kb on + strand at 929.605 kb on - strand at 929.606 kb on - strand at 929.629 kb on - strand at 929.664 kb on - strand at 929.665 kb on + strand at 929.803 kb on + strand, within Atu0941 at 929.971 kb on + strand at 929.981 kb on - strand at 930.008 kb on + strand at 930.016 kb on - strand at 930.060 kb on + strand at 930.070 kb on + strand at 930.254 kb on - strand, within Atu0942 at 930.274 kb on + strand, within Atu0942 at 930.460 kb on - strand, within Atu0942 at 930.473 kb on + strand, within Atu0942 at 930.623 kb on - strand, within Atu0942 at 930.629 kb on - strand, within Atu0942 at 930.656 kb on + strand, within Atu0942 at 930.739 kb on + strand, within Atu0942 at 930.744 kb on + strand, within Atu0942 at 930.744 kb on + strand, within Atu0942 at 930.749 kb on + strand, within Atu0942 at 930.769 kb on - strand, within Atu0942 at 930.868 kb on - strand, within Atu0942 at 930.870 kb on - strand, within Atu0942 at 931.061 kb on - strand, within Atu0942 at 931.089 kb on - strand, within Atu0942 at 931.104 kb on - strand, within Atu0942 at 931.132 kb on + strand, within Atu0942 at 931.132 kb on + strand, within Atu0942 at 931.148 kb on + strand, within Atu0942 at 931.156 kb on - strand, within Atu0942 at 931.196 kb on - strand, within Atu0942 at 931.352 kb on + strand at 931.352 kb on + strand at 931.360 kb on - strand at 931.360 kb on - strand at 931.492 kb on + strand at 931.492 kb on + strand at 931.492 kb on + strand at 931.497 kb on + strand at 931.497 kb on + strand at 931.497 kb on + strand at 931.500 kb on - strand at 931.502 kb on + strand at 931.502 kb on + strand at 931.510 kb on - strand at 931.510 kb on - strand at 931.549 kb on + strand, within Atu0943 at 931.550 kb on - strand, within Atu0943 at 931.761 kb on + strand at 931.781 kb on - strand at 931.785 kb on + strand at 931.870 kb on - strand at 931.870 kb on - strand at 931.926 kb on - strand, within Atu0944 at 932.001 kb on - strand, within Atu0944 at 932.165 kb on + strand, within Atu0944 at 932.242 kb on + strand, within Atu0944 at 932.352 kb on + strand, within Atu0944 at 932.390 kb on + strand, within Atu0944 at 932.390 kb on + strand, within Atu0944
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D07 remove 929,162 - Atu0939 0.73 +0.7 929,256 + +0.4 929,326 + Atu0940 0.26 -0.3 929,414 + Atu0940 0.50 +0.5 929,477 - Atu0940 0.68 -0.6 929,508 - Atu0940 0.76 +0.3 929,508 - Atu0940 0.76 -1.6 929,597 + -1.4 929,598 + -0.3 929,598 + +0.3 929,605 - -0.1 929,606 - -0.1 929,629 - +0.3 929,664 - -0.0 929,665 + +0.0 929,803 + Atu0941 0.48 -0.7 929,971 + -0.3 929,981 - -0.1 930,008 + -0.9 930,016 - -1.8 930,060 + -0.2 930,070 + -0.2 930,254 - Atu0942 0.16 -0.6 930,274 + Atu0942 0.17 +0.1 930,460 - Atu0942 0.31 -0.7 930,473 + Atu0942 0.32 -0.0 930,623 - Atu0942 0.43 +0.4 930,629 - Atu0942 0.43 -1.1 930,656 + Atu0942 0.45 +0.0 930,739 + Atu0942 0.51 -0.7 930,744 + Atu0942 0.51 -0.5 930,744 + Atu0942 0.51 -0.4 930,749 + Atu0942 0.52 -0.0 930,769 - Atu0942 0.53 -1.8 930,868 - Atu0942 0.60 +0.5 930,870 - Atu0942 0.61 -0.0 931,061 - Atu0942 0.74 -1.1 931,089 - Atu0942 0.76 +0.2 931,104 - Atu0942 0.77 +1.4 931,132 + Atu0942 0.79 +0.2 931,132 + Atu0942 0.79 -0.0 931,148 + Atu0942 0.81 -0.1 931,156 - Atu0942 0.81 -2.2 931,196 - Atu0942 0.84 -0.3 931,352 + +3.4 931,352 + -0.2 931,360 - -0.3 931,360 - -0.2 931,492 + -1.1 931,492 + -0.2 931,492 + -3.4 931,497 + +0.8 931,497 + +0.1 931,497 + +0.4 931,500 - -0.4 931,502 + +2.1 931,502 + +0.2 931,510 - +0.5 931,510 - -0.4 931,549 + Atu0943 0.32 -1.4 931,550 - Atu0943 0.32 -1.5 931,761 + -0.5 931,781 - -0.0 931,785 + +0.1 931,870 - +0.1 931,870 - -0.1 931,926 - Atu0944 0.12 +0.4 932,001 - Atu0944 0.16 -0.4 932,165 + Atu0944 0.26 -0.5 932,242 + Atu0944 0.31 +0.1 932,352 + Atu0944 0.38 +0.6 932,390 + Atu0944 0.40 -0.4 932,390 + Atu0944 0.40 -1.2
Or see this region's nucleotide sequence