Experiment: AgroPhage_D04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3672 and Atu3673 are separated by 41 nucleotides Atu3673 and Atu3674 are separated by 72 nucleotides Atu3674 and Atu3675 are separated by 45 nucleotides
Atu3672: Atu3672 - polyketide synthase, at 722,591 to 727,153
Atu3672
Atu3673: Atu3673 - siderophore biosynthesis protein, at 727,195 to 729,447
Atu3673
Atu3674: Atu3674 - hypothetical protein, at 729,520 to 729,723
Atu3674
Atu3675: Atu3675 - peptide synthetase, siderophore biosynthesis protein, at 729,769 to 734,331
Atu3675
Position (kb) 727
728
729
730 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 726.196 kb on - strand, within Atu3672 at 726.455 kb on + strand, within Atu3672 at 726.477 kb on + strand, within Atu3672 at 726.505 kb on + strand, within Atu3672 at 726.538 kb on - strand, within Atu3672 at 726.547 kb on + strand, within Atu3672 at 726.628 kb on + strand, within Atu3672 at 726.646 kb on + strand, within Atu3672 at 726.654 kb on - strand, within Atu3672 at 726.669 kb on - strand, within Atu3672 at 726.753 kb on - strand at 726.753 kb on - strand at 726.809 kb on + strand at 726.869 kb on + strand at 726.872 kb on - strand at 726.877 kb on - strand at 727.050 kb on - strand at 727.100 kb on - strand at 727.179 kb on + strand at 727.208 kb on + strand at 727.216 kb on - strand at 727.228 kb on + strand at 727.242 kb on + strand at 727.304 kb on + strand at 727.539 kb on + strand, within Atu3673 at 727.781 kb on + strand, within Atu3673 at 727.890 kb on + strand, within Atu3673 at 727.976 kb on - strand, within Atu3673 at 727.976 kb on - strand, within Atu3673 at 727.990 kb on + strand, within Atu3673 at 727.998 kb on - strand, within Atu3673 at 728.133 kb on + strand, within Atu3673 at 728.149 kb on - strand, within Atu3673 at 728.249 kb on - strand, within Atu3673 at 728.343 kb on + strand, within Atu3673 at 728.407 kb on + strand, within Atu3673 at 728.410 kb on - strand, within Atu3673 at 728.420 kb on - strand, within Atu3673 at 728.552 kb on - strand, within Atu3673 at 728.552 kb on - strand, within Atu3673 at 728.553 kb on + strand, within Atu3673 at 728.553 kb on + strand, within Atu3673 at 728.561 kb on + strand, within Atu3673 at 728.561 kb on - strand, within Atu3673 at 728.563 kb on + strand, within Atu3673 at 728.571 kb on - strand, within Atu3673 at 728.573 kb on + strand, within Atu3673 at 728.588 kb on - strand, within Atu3673 at 728.595 kb on - strand, within Atu3673 at 728.595 kb on - strand, within Atu3673 at 728.688 kb on + strand, within Atu3673 at 728.725 kb on + strand, within Atu3673 at 728.738 kb on - strand, within Atu3673 at 728.763 kb on - strand, within Atu3673 at 728.785 kb on - strand, within Atu3673 at 728.838 kb on + strand, within Atu3673 at 728.931 kb on + strand, within Atu3673 at 728.939 kb on - strand, within Atu3673 at 729.179 kb on - strand, within Atu3673 at 729.289 kb on - strand at 729.319 kb on - strand at 729.321 kb on - strand at 729.380 kb on - strand at 729.581 kb on - strand, within Atu3674 at 729.647 kb on - strand, within Atu3674 at 729.694 kb on + strand, within Atu3674 at 729.771 kb on + strand at 729.882 kb on - strand at 729.939 kb on + strand at 729.970 kb on - strand at 730.036 kb on - strand at 730.047 kb on + strand at 730.054 kb on - strand at 730.141 kb on + strand at 730.171 kb on + strand at 730.171 kb on + strand at 730.179 kb on - strand at 730.179 kb on - strand at 730.179 kb on - strand at 730.211 kb on - strand at 730.366 kb on - strand, within Atu3675 at 730.373 kb on + strand, within Atu3675 at 730.383 kb on + strand, within Atu3675 at 730.397 kb on - strand, within Atu3675
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D04 remove 726,196 - Atu3672 0.79 -0.7 726,455 + Atu3672 0.85 -0.2 726,477 + Atu3672 0.85 +1.5 726,505 + Atu3672 0.86 +0.1 726,538 - Atu3672 0.87 -2.1 726,547 + Atu3672 0.87 -0.1 726,628 + Atu3672 0.88 +0.1 726,646 + Atu3672 0.89 +0.5 726,654 - Atu3672 0.89 +0.7 726,669 - Atu3672 0.89 -0.9 726,753 - +0.1 726,753 - -1.6 726,809 + +0.2 726,869 + +0.9 726,872 - +1.1 726,877 - +0.1 727,050 - -0.8 727,100 - -0.6 727,179 + -0.4 727,208 + -1.3 727,216 - -0.7 727,228 + +1.1 727,242 + -1.2 727,304 + +0.2 727,539 + Atu3673 0.15 +3.6 727,781 + Atu3673 0.26 +0.2 727,890 + Atu3673 0.31 +0.7 727,976 - Atu3673 0.35 -0.2 727,976 - Atu3673 0.35 -0.5 727,990 + Atu3673 0.35 +0.1 727,998 - Atu3673 0.36 +0.8 728,133 + Atu3673 0.42 -0.2 728,149 - Atu3673 0.42 +0.1 728,249 - Atu3673 0.47 -2.0 728,343 + Atu3673 0.51 +0.1 728,407 + Atu3673 0.54 +0.3 728,410 - Atu3673 0.54 -0.8 728,420 - Atu3673 0.54 -0.3 728,552 - Atu3673 0.60 -0.2 728,552 - Atu3673 0.60 +2.7 728,553 + Atu3673 0.60 +1.3 728,553 + Atu3673 0.60 +1.6 728,561 + Atu3673 0.61 +0.1 728,561 - Atu3673 0.61 +1.0 728,563 + Atu3673 0.61 +0.4 728,571 - Atu3673 0.61 +0.1 728,573 + Atu3673 0.61 +0.8 728,588 - Atu3673 0.62 +1.0 728,595 - Atu3673 0.62 -0.3 728,595 - Atu3673 0.62 -0.1 728,688 + Atu3673 0.66 -0.3 728,725 + Atu3673 0.68 +0.1 728,738 - Atu3673 0.68 +0.5 728,763 - Atu3673 0.70 -0.1 728,785 - Atu3673 0.71 -1.0 728,838 + Atu3673 0.73 +0.1 728,931 + Atu3673 0.77 +0.5 728,939 - Atu3673 0.77 -0.3 729,179 - Atu3673 0.88 +2.9 729,289 - +0.3 729,319 - +0.7 729,321 - +1.1 729,380 - -0.3 729,581 - Atu3674 0.30 -1.0 729,647 - Atu3674 0.62 +0.3 729,694 + Atu3674 0.85 -0.3 729,771 + +0.9 729,882 - +1.0 729,939 + +2.0 729,970 - +0.0 730,036 - -0.3 730,047 + -0.7 730,054 - +0.2 730,141 + +0.2 730,171 + +1.6 730,171 + +0.5 730,179 - -1.8 730,179 - -0.5 730,179 - +0.3 730,211 - -0.2 730,366 - Atu3675 0.13 -2.1 730,373 + Atu3675 0.13 -0.1 730,383 + Atu3675 0.13 -1.1 730,397 - Atu3675 0.14 -1.6
Or see this region's nucleotide sequence