Experiment: AgroPhage_D04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3587 and Atu3588 are separated by 9 nucleotides Atu3588 and Atu3589 are separated by 48 nucleotides Atu3589 and Atu3590 overlap by 33 nucleotides
Atu3587: Atu3587 - transcriptional regulator, at 642,973 to 644,391
Atu3587
Atu3588: Atu3588 - DNA-3-methyladenine glycosidase II, at 644,401 to 645,048
Atu3588
Atu3589: Atu3589 - glutamyl-Q tRNA(Asp) synthetase, at 645,097 to 645,996
Atu3589
Atu3590: Atu3590 - transporter, at 645,964 to 646,881
Atu3590
Position (kb) 645
646 Strain fitness (log2 ratio) -2
-1
0
1
2 at 644.110 kb on + strand, within Atu3587 at 644.224 kb on + strand, within Atu3587 at 644.266 kb on + strand at 644.308 kb on - strand at 644.362 kb on + strand at 644.362 kb on + strand at 644.362 kb on + strand at 644.368 kb on - strand at 644.370 kb on - strand at 644.393 kb on - strand at 644.404 kb on + strand at 644.412 kb on - strand at 644.543 kb on - strand, within Atu3588 at 644.610 kb on + strand, within Atu3588 at 644.611 kb on - strand, within Atu3588 at 644.618 kb on - strand, within Atu3588 at 644.661 kb on + strand, within Atu3588 at 644.758 kb on - strand, within Atu3588 at 645.032 kb on - strand at 645.088 kb on + strand at 645.088 kb on + strand at 645.088 kb on + strand at 645.096 kb on - strand at 645.116 kb on - strand at 645.222 kb on + strand, within Atu3589 at 645.286 kb on - strand, within Atu3589 at 645.327 kb on + strand, within Atu3589 at 645.390 kb on - strand, within Atu3589 at 645.401 kb on + strand, within Atu3589 at 645.528 kb on - strand, within Atu3589 at 645.703 kb on + strand, within Atu3589 at 645.706 kb on - strand, within Atu3589 at 645.713 kb on + strand, within Atu3589 at 645.756 kb on - strand, within Atu3589 at 645.776 kb on + strand, within Atu3589 at 645.784 kb on - strand, within Atu3589 at 645.801 kb on + strand, within Atu3589 at 645.804 kb on - strand, within Atu3589 at 645.828 kb on + strand, within Atu3589 at 645.836 kb on - strand, within Atu3589 at 645.838 kb on + strand, within Atu3589 at 645.887 kb on + strand, within Atu3589 at 645.953 kb on + strand at 645.960 kb on - strand at 645.990 kb on + strand at 646.033 kb on - strand at 646.073 kb on + strand, within Atu3590 at 646.134 kb on + strand, within Atu3590 at 646.153 kb on + strand, within Atu3590 at 646.292 kb on - strand, within Atu3590 at 646.438 kb on - strand, within Atu3590 at 646.528 kb on - strand, within Atu3590 at 646.629 kb on - strand, within Atu3590 at 646.629 kb on - strand, within Atu3590 at 646.665 kb on + strand, within Atu3590 at 646.665 kb on + strand, within Atu3590 at 646.673 kb on - strand, within Atu3590 at 646.831 kb on + strand at 646.943 kb on + strand at 646.943 kb on + strand at 646.951 kb on - strand at 646.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D04 remove 644,110 + Atu3587 0.80 -1.4 644,224 + Atu3587 0.88 +0.1 644,266 + -0.7 644,308 - +0.5 644,362 + -1.2 644,362 + -0.4 644,362 + +0.5 644,368 - -1.3 644,370 - -1.5 644,393 - +0.1 644,404 + +0.5 644,412 - -0.3 644,543 - Atu3588 0.22 -0.3 644,610 + Atu3588 0.32 -0.7 644,611 - Atu3588 0.32 -0.3 644,618 - Atu3588 0.33 +0.2 644,661 + Atu3588 0.40 -0.6 644,758 - Atu3588 0.55 -1.3 645,032 - -0.2 645,088 + -0.6 645,088 + -1.5 645,088 + -1.6 645,096 - -1.2 645,116 - -0.0 645,222 + Atu3589 0.14 -0.2 645,286 - Atu3589 0.21 -0.2 645,327 + Atu3589 0.26 +1.1 645,390 - Atu3589 0.33 -0.5 645,401 + Atu3589 0.34 +1.4 645,528 - Atu3589 0.48 +0.1 645,703 + Atu3589 0.67 -0.4 645,706 - Atu3589 0.68 +1.1 645,713 + Atu3589 0.68 +0.6 645,756 - Atu3589 0.73 +0.8 645,776 + Atu3589 0.75 -0.0 645,784 - Atu3589 0.76 -2.1 645,801 + Atu3589 0.78 +1.0 645,804 - Atu3589 0.79 +1.9 645,828 + Atu3589 0.81 +0.5 645,836 - Atu3589 0.82 +0.8 645,838 + Atu3589 0.82 +0.2 645,887 + Atu3589 0.88 +0.5 645,953 + -0.8 645,960 - -0.5 645,990 + +0.7 646,033 - +0.5 646,073 + Atu3590 0.12 +0.2 646,134 + Atu3590 0.19 +0.7 646,153 + Atu3590 0.21 -0.3 646,292 - Atu3590 0.36 +0.1 646,438 - Atu3590 0.52 -1.7 646,528 - Atu3590 0.61 -1.1 646,629 - Atu3590 0.72 -1.0 646,629 - Atu3590 0.72 -0.9 646,665 + Atu3590 0.76 -0.2 646,665 + Atu3590 0.76 -0.9 646,673 - Atu3590 0.77 -0.1 646,831 + -1.0 646,943 + +1.8 646,943 + +0.4 646,951 - +0.6 646,956 - -0.7
Or see this region's nucleotide sequence