Experiment: AgroPhage_D04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3513 and Atu3514 are separated by 17 nucleotides Atu3514 and Atu3515 are separated by 71 nucleotides Atu3515 and Atu3516 are separated by 172 nucleotides Atu3516 and Atu3517 overlap by 4 nucleotides
Atu3513: Atu3513 - methyltransferase, at 561,936 to 562,817
Atu3513
Atu3514: Atu3514 - fimbriae associated protein, at 562,835 to 563,050
Atu3514
Atu3515: Atu3515 - hypothetical protein, at 563,122 to 563,436
Atu3515
Atu3516: Atu3516 - MutT family NTP pyrophosphatase, at 563,609 to 564,022
Atu3516
Atu3517: Atu3517 - acetyltransferase, at 564,019 to 564,795
Atu3517
Position (kb) 563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 562.787 kb on - strand at 562.887 kb on + strand, within Atu3514 at 563.140 kb on + strand at 563.148 kb on - strand at 563.148 kb on - strand at 563.169 kb on - strand, within Atu3515 at 563.209 kb on - strand, within Atu3515 at 563.215 kb on - strand, within Atu3515 at 563.215 kb on - strand, within Atu3515 at 563.301 kb on + strand, within Atu3515 at 563.301 kb on + strand, within Atu3515 at 563.538 kb on - strand at 563.579 kb on + strand at 563.586 kb on - strand at 563.626 kb on + strand at 563.636 kb on - strand at 563.676 kb on + strand, within Atu3516 at 563.736 kb on - strand, within Atu3516 at 563.780 kb on + strand, within Atu3516 at 563.811 kb on - strand, within Atu3516 at 563.856 kb on - strand, within Atu3516 at 563.882 kb on - strand, within Atu3516 at 563.884 kb on + strand, within Atu3516 at 563.977 kb on + strand, within Atu3516 at 563.985 kb on - strand at 564.033 kb on + strand at 564.067 kb on - strand at 564.067 kb on - strand at 564.157 kb on + strand, within Atu3517 at 564.170 kb on - strand, within Atu3517 at 564.259 kb on + strand, within Atu3517 at 564.283 kb on - strand, within Atu3517 at 564.288 kb on - strand, within Atu3517 at 564.326 kb on + strand, within Atu3517
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D04 remove 562,787 - -1.2 562,887 + Atu3514 0.24 -0.7 563,140 + -1.4 563,148 - -1.9 563,148 - -0.2 563,169 - Atu3515 0.15 -2.5 563,209 - Atu3515 0.28 -0.5 563,215 - Atu3515 0.30 +1.3 563,215 - Atu3515 0.30 +0.7 563,301 + Atu3515 0.57 -1.9 563,301 + Atu3515 0.57 +0.1 563,538 - -0.7 563,579 + -0.6 563,586 - -0.2 563,626 + -0.2 563,636 - -1.1 563,676 + Atu3516 0.16 +2.4 563,736 - Atu3516 0.31 +1.2 563,780 + Atu3516 0.41 -1.5 563,811 - Atu3516 0.49 -0.8 563,856 - Atu3516 0.60 -1.8 563,882 - Atu3516 0.66 -1.5 563,884 + Atu3516 0.66 -0.4 563,977 + Atu3516 0.89 -0.2 563,985 - -2.8 564,033 + -0.4 564,067 - -0.1 564,067 - -0.6 564,157 + Atu3517 0.18 -2.4 564,170 - Atu3517 0.19 -2.9 564,259 + Atu3517 0.31 -0.3 564,283 - Atu3517 0.34 -2.0 564,288 - Atu3517 0.35 -3.0 564,326 + Atu3517 0.40 -2.3
Or see this region's nucleotide sequence