Experiment: AgroPhage_D04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3375 and Atu3376 overlap by 4 nucleotides Atu3376 and Atu3377 are separated by 7 nucleotides Atu3377 and Atu3378 overlap by 4 nucleotides Atu3378 and Atu3379 overlap by 4 nucleotides
Atu3375: Atu3375 - peptide ABC transporter substrate-binding protein, at 416,506 to 418,083
Atu3375
Atu3376: Atu3376 - beta-lactamase, at 418,080 to 418,928
Atu3376
Atu3377: Atu3377 - peptide ABC transporter ATPase, at 418,936 to 420,570
Atu3377
Atu3378: Atu3378 - oligopeptide ABC transporter permease, at 420,567 to 421,385
Atu3378
Atu3379: Atu3379 - peptide ABC transporter permease, at 421,382 to 422,326
Atu3379
Position (kb) 418
419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 417.950 kb on + strand at 417.960 kb on + strand at 418.052 kb on + strand at 418.052 kb on + strand at 418.060 kb on - strand at 418.060 kb on - strand at 418.060 kb on - strand at 418.060 kb on - strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.085 kb on + strand at 418.093 kb on - strand at 418.106 kb on - strand at 418.186 kb on + strand, within Atu3376 at 418.186 kb on + strand, within Atu3376 at 418.249 kb on - strand, within Atu3376 at 418.264 kb on - strand, within Atu3376 at 418.378 kb on + strand, within Atu3376 at 418.404 kb on - strand, within Atu3376 at 418.475 kb on - strand, within Atu3376 at 418.576 kb on - strand, within Atu3376 at 418.578 kb on + strand, within Atu3376 at 418.586 kb on - strand, within Atu3376 at 418.621 kb on - strand, within Atu3376 at 418.661 kb on + strand, within Atu3376 at 418.709 kb on + strand, within Atu3376 at 418.756 kb on + strand, within Atu3376 at 418.842 kb on + strand, within Atu3376 at 418.850 kb on - strand at 418.886 kb on - strand at 418.905 kb on - strand at 419.034 kb on + strand at 419.034 kb on + strand at 419.042 kb on - strand at 419.133 kb on + strand, within Atu3377 at 419.135 kb on - strand, within Atu3377 at 419.243 kb on - strand, within Atu3377 at 419.323 kb on + strand, within Atu3377 at 419.328 kb on + strand, within Atu3377 at 419.336 kb on - strand, within Atu3377 at 419.341 kb on - strand, within Atu3377 at 419.343 kb on + strand, within Atu3377 at 419.349 kb on + strand, within Atu3377 at 419.349 kb on + strand, within Atu3377 at 419.349 kb on + strand, within Atu3377 at 419.351 kb on - strand, within Atu3377 at 419.405 kb on - strand, within Atu3377 at 419.431 kb on - strand, within Atu3377 at 419.455 kb on - strand, within Atu3377 at 419.455 kb on - strand, within Atu3377 at 419.476 kb on - strand, within Atu3377 at 419.497 kb on + strand, within Atu3377 at 419.602 kb on - strand, within Atu3377 at 419.698 kb on - strand, within Atu3377 at 419.766 kb on + strand, within Atu3377 at 419.774 kb on - strand, within Atu3377 at 419.799 kb on - strand, within Atu3377 at 419.847 kb on + strand, within Atu3377 at 419.860 kb on + strand, within Atu3377 at 419.906 kb on + strand, within Atu3377 at 419.918 kb on + strand, within Atu3377 at 419.938 kb on + strand, within Atu3377 at 419.988 kb on + strand, within Atu3377 at 419.988 kb on - strand, within Atu3377 at 420.068 kb on + strand, within Atu3377 at 420.290 kb on + strand, within Atu3377 at 420.305 kb on - strand, within Atu3377 at 420.340 kb on + strand, within Atu3377 at 420.394 kb on + strand, within Atu3377 at 420.494 kb on + strand at 420.547 kb on + strand at 420.577 kb on + strand at 420.590 kb on + strand at 420.598 kb on - strand at 420.676 kb on - strand, within Atu3378 at 420.746 kb on + strand, within Atu3378 at 420.754 kb on - strand, within Atu3378 at 420.762 kb on + strand, within Atu3378 at 420.832 kb on - strand, within Atu3378 at 420.923 kb on + strand, within Atu3378 at 420.923 kb on + strand, within Atu3378 at 420.926 kb on - strand, within Atu3378 at 420.931 kb on - strand, within Atu3378 at 421.019 kb on + strand, within Atu3378 at 421.231 kb on - strand, within Atu3378 at 421.281 kb on - strand, within Atu3378 at 421.300 kb on + strand, within Atu3378 at 421.300 kb on + strand, within Atu3378 at 421.305 kb on + strand at 421.308 kb on - strand at 421.308 kb on - strand at 421.318 kb on - strand at 421.329 kb on + strand at 421.377 kb on - strand at 421.413 kb on + strand at 421.421 kb on - strand at 421.421 kb on - strand at 421.483 kb on - strand, within Atu3379 at 421.488 kb on + strand, within Atu3379 at 421.541 kb on + strand, within Atu3379 at 421.541 kb on + strand, within Atu3379
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D04 remove 417,950 + -0.6 417,960 + -0.6 418,052 + -0.5 418,052 + -0.2 418,060 - +1.3 418,060 - -0.3 418,060 - +0.1 418,060 - -0.1 418,085 + -1.2 418,085 + -1.2 418,085 + +1.1 418,085 + +0.7 418,085 + +0.2 418,085 + +0.4 418,093 - -0.3 418,106 - -0.0 418,186 + Atu3376 0.12 +0.1 418,186 + Atu3376 0.12 -1.3 418,249 - Atu3376 0.20 +0.1 418,264 - Atu3376 0.22 -0.6 418,378 + Atu3376 0.35 +0.5 418,404 - Atu3376 0.38 -1.6 418,475 - Atu3376 0.47 +0.7 418,576 - Atu3376 0.58 -2.3 418,578 + Atu3376 0.59 +0.5 418,586 - Atu3376 0.60 +0.6 418,621 - Atu3376 0.64 -0.1 418,661 + Atu3376 0.68 +1.7 418,709 + Atu3376 0.74 -1.1 418,756 + Atu3376 0.80 -0.1 418,842 + Atu3376 0.90 -0.8 418,850 - -0.3 418,886 - -0.3 418,905 - -1.6 419,034 + -0.1 419,034 + -1.9 419,042 - +0.7 419,133 + Atu3377 0.12 -0.0 419,135 - Atu3377 0.12 -0.6 419,243 - Atu3377 0.19 -0.5 419,323 + Atu3377 0.24 +0.5 419,328 + Atu3377 0.24 -1.6 419,336 - Atu3377 0.24 +0.8 419,341 - Atu3377 0.25 -0.1 419,343 + Atu3377 0.25 +0.7 419,349 + Atu3377 0.25 -0.4 419,349 + Atu3377 0.25 +1.1 419,349 + Atu3377 0.25 -0.8 419,351 - Atu3377 0.25 +0.6 419,405 - Atu3377 0.29 +0.1 419,431 - Atu3377 0.30 +0.9 419,455 - Atu3377 0.32 -0.1 419,455 - Atu3377 0.32 -3.6 419,476 - Atu3377 0.33 +1.3 419,497 + Atu3377 0.34 -0.8 419,602 - Atu3377 0.41 +0.4 419,698 - Atu3377 0.47 +0.5 419,766 + Atu3377 0.51 +0.9 419,774 - Atu3377 0.51 -1.5 419,799 - Atu3377 0.53 -0.4 419,847 + Atu3377 0.56 -0.3 419,860 + Atu3377 0.57 -0.6 419,906 + Atu3377 0.59 -1.0 419,918 + Atu3377 0.60 +1.0 419,938 + Atu3377 0.61 +2.6 419,988 + Atu3377 0.64 -0.8 419,988 - Atu3377 0.64 +0.3 420,068 + Atu3377 0.69 +3.0 420,290 + Atu3377 0.83 +0.6 420,305 - Atu3377 0.84 +1.0 420,340 + Atu3377 0.86 +0.4 420,394 + Atu3377 0.89 +0.4 420,494 + +0.3 420,547 + +0.7 420,577 + +0.7 420,590 + -1.4 420,598 - +0.7 420,676 - Atu3378 0.13 -0.7 420,746 + Atu3378 0.22 -1.0 420,754 - Atu3378 0.23 -0.7 420,762 + Atu3378 0.24 -0.2 420,832 - Atu3378 0.32 -1.7 420,923 + Atu3378 0.43 -2.7 420,923 + Atu3378 0.43 -0.2 420,926 - Atu3378 0.44 -0.4 420,931 - Atu3378 0.44 -1.8 421,019 + Atu3378 0.55 -0.1 421,231 - Atu3378 0.81 +1.4 421,281 - Atu3378 0.87 -1.6 421,300 + Atu3378 0.89 +1.2 421,300 + Atu3378 0.89 +0.1 421,305 + +0.3 421,308 - +1.0 421,308 - -0.9 421,318 - +1.7 421,329 + -1.4 421,377 - +0.9 421,413 + +0.5 421,421 - -0.3 421,421 - +0.4 421,483 - Atu3379 0.11 -2.3 421,488 + Atu3379 0.11 +3.9 421,541 + Atu3379 0.17 -0.2 421,541 + Atu3379 0.17 -1.8
Or see this region's nucleotide sequence