Experiment: AgroPhage_D04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3140 and Atu3141 are separated by 113 nucleotides Atu3141 and Atu3142 overlap by 4 nucleotides Atu3142 and Atu3143 are separated by 138 nucleotides
Atu3140: Atu3140 - 5-dehydro-4-deoxyglucarate dehydratase, at 148,144 to 149,055
Atu3140
Atu3141: Atu3141 - 2-deoxy-D-gluconate 3-dehydrogenase, at 149,169 to 149,912
Atu3141
Atu3142: Atu3142 - 5-keto-4-deoxyuronate isomerase, at 149,909 to 150,733
Atu3142
Atu3143: Atu3143 - hypothetical protein, at 150,872 to 151,669
Atu3143
Position (kb) 149
150 Strain fitness (log2 ratio) -2
-1
0
1 at 148.210 kb on + strand at 148.243 kb on + strand, within Atu3140 at 148.251 kb on + strand, within Atu3140 at 148.280 kb on + strand, within Atu3140 at 148.280 kb on + strand, within Atu3140 at 148.294 kb on - strand, within Atu3140 at 148.329 kb on - strand, within Atu3140 at 148.371 kb on + strand, within Atu3140 at 148.376 kb on + strand, within Atu3140 at 148.376 kb on + strand, within Atu3140 at 148.384 kb on - strand, within Atu3140 at 148.384 kb on - strand, within Atu3140 at 148.419 kb on - strand, within Atu3140 at 148.440 kb on - strand, within Atu3140 at 148.440 kb on - strand, within Atu3140 at 148.681 kb on - strand, within Atu3140 at 148.888 kb on - strand, within Atu3140 at 148.893 kb on - strand, within Atu3140 at 148.939 kb on + strand, within Atu3140 at 148.958 kb on - strand, within Atu3140 at 149.043 kb on + strand at 149.056 kb on - strand at 149.056 kb on - strand at 149.209 kb on - strand at 149.316 kb on - strand, within Atu3141 at 149.392 kb on - strand, within Atu3141 at 149.455 kb on + strand, within Atu3141 at 149.455 kb on + strand, within Atu3141 at 149.455 kb on + strand, within Atu3141 at 149.463 kb on - strand, within Atu3141 at 149.689 kb on + strand, within Atu3141 at 149.692 kb on - strand, within Atu3141 at 149.765 kb on + strand, within Atu3141 at 149.771 kb on - strand, within Atu3141 at 149.797 kb on + strand, within Atu3141 at 149.797 kb on + strand, within Atu3141 at 149.805 kb on - strand, within Atu3141 at 149.815 kb on - strand, within Atu3141 at 149.831 kb on - strand, within Atu3141 at 149.920 kb on - strand at 149.964 kb on - strand at 149.978 kb on + strand at 150.173 kb on + strand, within Atu3142 at 150.173 kb on + strand, within Atu3142 at 150.201 kb on + strand, within Atu3142 at 150.201 kb on + strand, within Atu3142 at 150.201 kb on + strand, within Atu3142 at 150.209 kb on - strand, within Atu3142 at 150.209 kb on - strand, within Atu3142 at 150.214 kb on - strand, within Atu3142 at 150.261 kb on - strand, within Atu3142 at 150.291 kb on + strand, within Atu3142 at 150.325 kb on - strand, within Atu3142 at 150.351 kb on + strand, within Atu3142 at 150.359 kb on - strand, within Atu3142 at 150.359 kb on - strand, within Atu3142 at 150.363 kb on + strand, within Atu3142 at 150.373 kb on + strand, within Atu3142 at 150.381 kb on - strand, within Atu3142 at 150.422 kb on - strand, within Atu3142 at 150.564 kb on + strand, within Atu3142 at 150.564 kb on + strand, within Atu3142 at 150.572 kb on - strand, within Atu3142 at 150.572 kb on - strand, within Atu3142 at 150.589 kb on - strand, within Atu3142 at 150.604 kb on - strand, within Atu3142 at 150.606 kb on + strand, within Atu3142 at 150.606 kb on + strand, within Atu3142 at 150.606 kb on + strand, within Atu3142 at 150.614 kb on - strand, within Atu3142 at 150.614 kb on - strand, within Atu3142 at 150.614 kb on - strand, within Atu3142 at 150.614 kb on - strand, within Atu3142 at 150.630 kb on + strand, within Atu3142 at 150.675 kb on - strand at 150.817 kb on + strand at 150.817 kb on - strand at 150.835 kb on - strand at 150.835 kb on - strand at 150.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D04 remove 148,210 + +0.3 148,243 + Atu3140 0.11 -1.0 148,251 + Atu3140 0.12 +0.6 148,280 + Atu3140 0.15 +0.8 148,280 + Atu3140 0.15 -0.0 148,294 - Atu3140 0.16 -1.6 148,329 - Atu3140 0.20 -0.0 148,371 + Atu3140 0.25 -0.3 148,376 + Atu3140 0.25 -1.2 148,376 + Atu3140 0.25 +0.5 148,384 - Atu3140 0.26 -1.9 148,384 - Atu3140 0.26 -0.1 148,419 - Atu3140 0.30 -0.9 148,440 - Atu3140 0.32 -0.1 148,440 - Atu3140 0.32 -2.0 148,681 - Atu3140 0.59 -1.4 148,888 - Atu3140 0.82 +1.3 148,893 - Atu3140 0.82 +1.4 148,939 + Atu3140 0.87 +1.7 148,958 - Atu3140 0.89 -1.0 149,043 + -2.1 149,056 - -0.3 149,056 - -0.1 149,209 - -1.4 149,316 - Atu3141 0.20 -0.8 149,392 - Atu3141 0.30 -1.1 149,455 + Atu3141 0.38 -1.7 149,455 + Atu3141 0.38 -1.3 149,455 + Atu3141 0.38 +0.6 149,463 - Atu3141 0.40 +1.3 149,689 + Atu3141 0.70 -0.4 149,692 - Atu3141 0.70 -1.3 149,765 + Atu3141 0.80 -0.8 149,771 - Atu3141 0.81 +0.1 149,797 + Atu3141 0.84 -2.0 149,797 + Atu3141 0.84 -0.6 149,805 - Atu3141 0.85 +1.5 149,815 - Atu3141 0.87 +0.1 149,831 - Atu3141 0.89 -0.6 149,920 - +0.8 149,964 - -1.2 149,978 + +0.0 150,173 + Atu3142 0.32 +0.2 150,173 + Atu3142 0.32 -0.3 150,201 + Atu3142 0.35 +0.5 150,201 + Atu3142 0.35 -1.9 150,201 + Atu3142 0.35 +0.3 150,209 - Atu3142 0.36 +0.4 150,209 - Atu3142 0.36 +0.2 150,214 - Atu3142 0.37 -1.5 150,261 - Atu3142 0.43 -0.1 150,291 + Atu3142 0.46 -0.8 150,325 - Atu3142 0.50 +0.2 150,351 + Atu3142 0.54 +1.1 150,359 - Atu3142 0.55 +0.5 150,359 - Atu3142 0.55 -0.9 150,363 + Atu3142 0.55 -1.8 150,373 + Atu3142 0.56 -0.1 150,381 - Atu3142 0.57 +0.5 150,422 - Atu3142 0.62 +1.0 150,564 + Atu3142 0.79 +0.4 150,564 + Atu3142 0.79 -2.5 150,572 - Atu3142 0.80 -0.5 150,572 - Atu3142 0.80 -1.3 150,589 - Atu3142 0.82 +0.1 150,604 - Atu3142 0.84 +0.5 150,606 + Atu3142 0.84 -0.6 150,606 + Atu3142 0.84 -0.9 150,606 + Atu3142 0.84 -0.4 150,614 - Atu3142 0.85 -1.4 150,614 - Atu3142 0.85 -0.2 150,614 - Atu3142 0.85 -0.6 150,614 - Atu3142 0.85 +1.0 150,630 + Atu3142 0.87 -1.0 150,675 - -0.1 150,817 + +0.5 150,817 - +0.2 150,835 - -1.0 150,835 - -1.7 150,837 + +1.3
Or see this region's nucleotide sequence