Experiment: AgroPhage_D04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0553 and Atu0554 overlap by 4 nucleotides Atu0554 and Atu0555 are separated by 3 nucleotides Atu0555 and Atu0556 are separated by 170 nucleotides Atu0556 and Atu0557 are separated by 163 nucleotides
Atu0553: Atu0553 - flagellar hook-basal body complex protein, at 540,724 to 541,062
Atu0553
Atu0554: Atu0554 - flagellar basal-body rod protein, at 541,059 to 541,478
Atu0554
Atu0555: Atu0555 - flagellar basal-body rod protein FlgB, at 541,482 to 541,874
Atu0555
Atu0556: Atu0556 - hypothetical protein, at 542,045 to 542,449
Atu0556
Atu0557: Atu0557 - flagellum-specific ATP synthase, at 542,613 to 544,034
Atu0557
Position (kb) 542
543 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 541.119 kb on + strand, within Atu0554 at 541.300 kb on + strand, within Atu0554 at 541.316 kb on + strand, within Atu0554 at 541.319 kb on - strand, within Atu0554 at 541.347 kb on + strand, within Atu0554 at 541.360 kb on - strand, within Atu0554 at 541.417 kb on + strand, within Atu0554 at 541.423 kb on - strand, within Atu0554 at 541.423 kb on - strand, within Atu0554 at 541.425 kb on - strand, within Atu0554 at 541.487 kb on + strand at 541.519 kb on + strand at 541.536 kb on - strand, within Atu0555 at 541.567 kb on + strand, within Atu0555 at 541.570 kb on - strand, within Atu0555 at 541.691 kb on + strand, within Atu0555 at 541.693 kb on - strand, within Atu0555 at 541.693 kb on - strand, within Atu0555 at 541.699 kb on - strand, within Atu0555 at 541.699 kb on - strand, within Atu0555 at 541.704 kb on - strand, within Atu0555 at 541.728 kb on - strand, within Atu0555 at 541.777 kb on - strand, within Atu0555 at 541.785 kb on - strand, within Atu0555 at 541.895 kb on + strand at 541.917 kb on - strand at 542.097 kb on + strand, within Atu0556 at 542.105 kb on - strand, within Atu0556 at 542.150 kb on + strand, within Atu0556 at 542.185 kb on - strand, within Atu0556 at 542.198 kb on + strand, within Atu0556 at 542.283 kb on - strand, within Atu0556 at 542.383 kb on - strand, within Atu0556 at 542.583 kb on + strand at 542.610 kb on + strand at 542.642 kb on - strand at 542.662 kb on - strand at 542.766 kb on + strand, within Atu0557 at 542.790 kb on - strand, within Atu0557 at 542.845 kb on + strand, within Atu0557 at 542.872 kb on - strand, within Atu0557 at 542.925 kb on + strand, within Atu0557 at 542.933 kb on - strand, within Atu0557 at 542.956 kb on - strand, within Atu0557 at 543.039 kb on + strand, within Atu0557 at 543.047 kb on - strand, within Atu0557 at 543.083 kb on + strand, within Atu0557 at 543.091 kb on - strand, within Atu0557 at 543.091 kb on - strand, within Atu0557 at 543.091 kb on - strand, within Atu0557 at 543.091 kb on - strand, within Atu0557 at 543.105 kb on + strand, within Atu0557 at 543.130 kb on + strand, within Atu0557 at 543.138 kb on - strand, within Atu0557 at 543.288 kb on - strand, within Atu0557 at 543.288 kb on - strand, within Atu0557 at 543.298 kb on - strand, within Atu0557
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D04 remove 541,119 + Atu0554 0.14 +6.4 541,300 + Atu0554 0.57 +6.2 541,316 + Atu0554 0.61 +6.3 541,319 - Atu0554 0.62 +5.9 541,347 + Atu0554 0.69 +6.1 541,360 - Atu0554 0.72 +6.2 541,417 + Atu0554 0.85 +6.2 541,423 - Atu0554 0.87 +6.1 541,423 - Atu0554 0.87 +5.6 541,425 - Atu0554 0.87 +5.6 541,487 + +6.2 541,519 + +6.5 541,536 - Atu0555 0.14 +5.9 541,567 + Atu0555 0.22 +6.3 541,570 - Atu0555 0.22 +6.6 541,691 + Atu0555 0.53 +6.2 541,693 - Atu0555 0.54 +6.4 541,693 - Atu0555 0.54 +6.1 541,699 - Atu0555 0.55 +6.2 541,699 - Atu0555 0.55 +6.3 541,704 - Atu0555 0.56 +6.2 541,728 - Atu0555 0.63 +6.0 541,777 - Atu0555 0.75 +6.3 541,785 - Atu0555 0.77 +6.0 541,895 + +6.0 541,917 - +5.7 542,097 + Atu0556 0.13 +0.1 542,105 - Atu0556 0.15 -2.0 542,150 + Atu0556 0.26 -1.6 542,185 - Atu0556 0.35 -1.4 542,198 + Atu0556 0.38 +0.5 542,283 - Atu0556 0.59 -3.4 542,383 - Atu0556 0.83 -0.2 542,583 + -3.9 542,610 + -1.3 542,642 - +6.2 542,662 - -0.9 542,766 + Atu0557 0.11 +5.5 542,790 - Atu0557 0.12 +6.1 542,845 + Atu0557 0.16 +5.9 542,872 - Atu0557 0.18 +5.9 542,925 + Atu0557 0.22 +5.5 542,933 - Atu0557 0.23 +6.4 542,956 - Atu0557 0.24 +6.8 543,039 + Atu0557 0.30 +5.9 543,047 - Atu0557 0.31 +6.1 543,083 + Atu0557 0.33 +7.6 543,091 - Atu0557 0.34 +6.2 543,091 - Atu0557 0.34 +6.6 543,091 - Atu0557 0.34 +6.0 543,091 - Atu0557 0.34 +6.3 543,105 + Atu0557 0.35 +6.3 543,130 + Atu0557 0.36 +6.1 543,138 - Atu0557 0.37 +6.1 543,288 - Atu0557 0.47 +5.9 543,288 - Atu0557 0.47 +6.3 543,298 - Atu0557 0.48 +6.1
Or see this region's nucleotide sequence