Strain Fitness in Agrobacterium fabrum C58 around Atu0554

Experiment: AgroPhage_D04

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0552 and Atu0553 are separated by 18 nucleotidesAtu0553 and Atu0554 overlap by 4 nucleotidesAtu0554 and Atu0555 are separated by 3 nucleotidesAtu0555 and Atu0556 are separated by 170 nucleotides Atu0552: Atu0552 - flagellar basal-body rod protein, at 539,917 to 540,705 Atu0552 Atu0553: Atu0553 - flagellar hook-basal body complex protein, at 540,724 to 541,062 Atu0553 Atu0554: Atu0554 - flagellar basal-body rod protein, at 541,059 to 541,478 Atu0554 Atu0555: Atu0555 - flagellar basal-body rod protein FlgB, at 541,482 to 541,874 Atu0555 Atu0556: Atu0556 - hypothetical protein, at 542,045 to 542,449 Atu0556 Position (kb) 541 542Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 540.059 kb on + strand, within Atu0552at 540.243 kb on - strand, within Atu0552at 540.265 kb on - strand, within Atu0552at 540.369 kb on + strand, within Atu0552at 540.411 kb on - strand, within Atu0552at 540.411 kb on - strand, within Atu0552at 540.417 kb on + strand, within Atu0552at 540.461 kb on + strand, within Atu0552at 540.467 kb on - strand, within Atu0552at 540.541 kb on + strand, within Atu0552at 540.583 kb on + strand, within Atu0552at 540.617 kb on + strand, within Atu0552at 540.617 kb on + strand, within Atu0552at 540.625 kb on - strand, within Atu0552at 540.648 kb on + strandat 540.698 kb on + strandat 540.722 kb on + strandat 540.724 kb on - strandat 540.744 kb on + strandat 540.744 kb on + strandat 540.865 kb on - strand, within Atu0553at 540.938 kb on + strand, within Atu0553at 540.942 kb on - strand, within Atu0553at 540.951 kb on + strand, within Atu0553at 540.964 kb on - strand, within Atu0553at 540.972 kb on - strand, within Atu0553at 540.994 kb on - strand, within Atu0553at 541.037 kb on - strandat 541.119 kb on + strand, within Atu0554at 541.300 kb on + strand, within Atu0554at 541.316 kb on + strand, within Atu0554at 541.319 kb on - strand, within Atu0554at 541.347 kb on + strand, within Atu0554at 541.360 kb on - strand, within Atu0554at 541.417 kb on + strand, within Atu0554at 541.423 kb on - strand, within Atu0554at 541.423 kb on - strand, within Atu0554at 541.425 kb on - strand, within Atu0554at 541.487 kb on + strandat 541.519 kb on + strandat 541.536 kb on - strand, within Atu0555at 541.567 kb on + strand, within Atu0555at 541.570 kb on - strand, within Atu0555at 541.691 kb on + strand, within Atu0555at 541.693 kb on - strand, within Atu0555at 541.693 kb on - strand, within Atu0555at 541.699 kb on - strand, within Atu0555at 541.699 kb on - strand, within Atu0555at 541.704 kb on - strand, within Atu0555at 541.728 kb on - strand, within Atu0555at 541.777 kb on - strand, within Atu0555at 541.785 kb on - strand, within Atu0555at 541.895 kb on + strandat 541.917 kb on - strandat 542.097 kb on + strand, within Atu0556at 542.105 kb on - strand, within Atu0556at 542.150 kb on + strand, within Atu0556at 542.185 kb on - strand, within Atu0556at 542.198 kb on + strand, within Atu0556at 542.283 kb on - strand, within Atu0556at 542.383 kb on - strand, within Atu0556

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_D04
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540,059 + Atu0552 0.18 +6.1
540,243 - Atu0552 0.41 +5.9
540,265 - Atu0552 0.44 +5.3
540,369 + Atu0552 0.57 +6.5
540,411 - Atu0552 0.63 +6.2
540,411 - Atu0552 0.63 +5.7
540,417 + Atu0552 0.63 +6.0
540,461 + Atu0552 0.69 +5.4
540,467 - Atu0552 0.70 +6.3
540,541 + Atu0552 0.79 +6.0
540,583 + Atu0552 0.84 +6.0
540,617 + Atu0552 0.89 +5.8
540,617 + Atu0552 0.89 +6.2
540,625 - Atu0552 0.90 +6.3
540,648 + +5.1
540,698 + +5.6
540,722 + +6.6
540,724 - +6.4
540,744 + +6.0
540,744 + +6.8
540,865 - Atu0553 0.42 +6.5
540,938 + Atu0553 0.63 +6.6
540,942 - Atu0553 0.64 +5.9
540,951 + Atu0553 0.67 +6.3
540,964 - Atu0553 0.71 +6.5
540,972 - Atu0553 0.73 +5.5
540,994 - Atu0553 0.80 +6.1
541,037 - +6.0
541,119 + Atu0554 0.14 +6.4
541,300 + Atu0554 0.57 +6.2
541,316 + Atu0554 0.61 +6.3
541,319 - Atu0554 0.62 +5.9
541,347 + Atu0554 0.69 +6.1
541,360 - Atu0554 0.72 +6.2
541,417 + Atu0554 0.85 +6.2
541,423 - Atu0554 0.87 +6.1
541,423 - Atu0554 0.87 +5.6
541,425 - Atu0554 0.87 +5.6
541,487 + +6.2
541,519 + +6.5
541,536 - Atu0555 0.14 +5.9
541,567 + Atu0555 0.22 +6.3
541,570 - Atu0555 0.22 +6.6
541,691 + Atu0555 0.53 +6.2
541,693 - Atu0555 0.54 +6.4
541,693 - Atu0555 0.54 +6.1
541,699 - Atu0555 0.55 +6.2
541,699 - Atu0555 0.55 +6.3
541,704 - Atu0555 0.56 +6.2
541,728 - Atu0555 0.63 +6.0
541,777 - Atu0555 0.75 +6.3
541,785 - Atu0555 0.77 +6.0
541,895 + +6.0
541,917 - +5.7
542,097 + Atu0556 0.13 +0.1
542,105 - Atu0556 0.15 -2.0
542,150 + Atu0556 0.26 -1.6
542,185 - Atu0556 0.35 -1.3
542,198 + Atu0556 0.38 +0.5
542,283 - Atu0556 0.59 -3.4
542,383 - Atu0556 0.83 -0.2

Or see this region's nucleotide sequence