Experiment: AgroPhage_D04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0157 and Atu0158 are separated by 138 nucleotides Atu0158 and Atu0159 overlap by 1 nucleotides Atu0159 and Atu0160 are separated by 34 nucleotides
Atu0157: Atu0157 - ABC transporter, substrate binding protein, at 163,006 to 164,007
Atu0157
Atu0158: Atu0158 - ABC transporter, membrane spanning protein, at 164,146 to 164,919
Atu0158
Atu0159: Atu0159 - ABC transporter, nucleotide binding/ATPase protein, at 164,919 to 165,704
Atu0159
Atu0160: Atu0160 - transcriptional regulator, GntR family, at 165,739 to 166,476
Atu0160
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 163.959 kb on + strand at 163.993 kb on + strand at 163.994 kb on - strand at 164.073 kb on - strand at 164.084 kb on + strand at 164.153 kb on + strand at 164.155 kb on + strand at 164.155 kb on + strand at 164.164 kb on + strand at 164.164 kb on + strand at 164.221 kb on + strand at 164.221 kb on + strand at 164.359 kb on - strand, within Atu0158 at 164.427 kb on + strand, within Atu0158 at 164.447 kb on - strand, within Atu0158 at 164.480 kb on - strand, within Atu0158 at 164.491 kb on + strand, within Atu0158 at 164.613 kb on + strand, within Atu0158 at 164.621 kb on - strand, within Atu0158 at 164.621 kb on - strand, within Atu0158 at 164.624 kb on + strand, within Atu0158 at 164.624 kb on + strand, within Atu0158 at 164.624 kb on + strand, within Atu0158 at 164.656 kb on - strand, within Atu0158 at 164.719 kb on + strand, within Atu0158 at 164.724 kb on + strand, within Atu0158 at 164.725 kb on + strand, within Atu0158 at 164.733 kb on - strand, within Atu0158 at 164.744 kb on - strand, within Atu0158 at 164.813 kb on - strand, within Atu0158 at 164.848 kb on + strand at 164.857 kb on - strand at 164.896 kb on - strand at 165.043 kb on + strand, within Atu0159 at 165.131 kb on + strand, within Atu0159 at 165.158 kb on + strand, within Atu0159 at 165.173 kb on + strand, within Atu0159 at 165.175 kb on - strand, within Atu0159 at 165.183 kb on + strand, within Atu0159 at 165.337 kb on - strand, within Atu0159 at 165.460 kb on + strand, within Atu0159 at 165.460 kb on + strand, within Atu0159 at 165.460 kb on + strand, within Atu0159 at 165.460 kb on + strand, within Atu0159 at 165.468 kb on - strand, within Atu0159 at 165.468 kb on - strand, within Atu0159 at 165.468 kb on - strand, within Atu0159 at 165.468 kb on - strand, within Atu0159 at 165.472 kb on - strand, within Atu0159 at 165.527 kb on - strand, within Atu0159 at 165.527 kb on - strand, within Atu0159 at 165.532 kb on + strand, within Atu0159 at 165.605 kb on + strand, within Atu0159 at 165.615 kb on + strand, within Atu0159 at 165.632 kb on - strand at 165.647 kb on + strand at 165.739 kb on - strand at 165.799 kb on + strand at 165.818 kb on - strand, within Atu0160 at 165.839 kb on + strand, within Atu0160 at 165.885 kb on + strand, within Atu0160 at 165.926 kb on - strand, within Atu0160 at 165.933 kb on + strand, within Atu0160 at 166.046 kb on - strand, within Atu0160 at 166.069 kb on - strand, within Atu0160 at 166.107 kb on - strand, within Atu0160 at 166.137 kb on + strand, within Atu0160 at 166.282 kb on + strand, within Atu0160 at 166.452 kb on + strand at 166.452 kb on + strand at 166.700 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D04 remove 163,959 + -0.3 163,993 + +1.0 163,994 - +1.4 164,073 - +1.4 164,084 + -3.1 164,153 + -0.4 164,155 + +0.8 164,155 + -0.8 164,164 + +0.6 164,164 + +0.6 164,221 + -0.4 164,221 + +0.7 164,359 - Atu0158 0.28 +0.0 164,427 + Atu0158 0.36 -0.9 164,447 - Atu0158 0.39 -0.5 164,480 - Atu0158 0.43 +0.4 164,491 + Atu0158 0.45 -0.0 164,613 + Atu0158 0.60 +1.7 164,621 - Atu0158 0.61 -1.0 164,621 - Atu0158 0.61 -0.1 164,624 + Atu0158 0.62 +0.3 164,624 + Atu0158 0.62 -0.8 164,624 + Atu0158 0.62 -0.7 164,656 - Atu0158 0.66 +0.5 164,719 + Atu0158 0.74 +0.6 164,724 + Atu0158 0.75 +0.2 164,725 + Atu0158 0.75 +0.3 164,733 - Atu0158 0.76 -0.9 164,744 - Atu0158 0.77 -1.1 164,813 - Atu0158 0.86 -0.1 164,848 + -3.2 164,857 - +1.8 164,896 - -0.1 165,043 + Atu0159 0.16 -0.6 165,131 + Atu0159 0.27 +2.0 165,158 + Atu0159 0.30 +0.0 165,173 + Atu0159 0.32 -0.0 165,175 - Atu0159 0.33 +1.4 165,183 + Atu0159 0.34 -0.3 165,337 - Atu0159 0.53 +0.5 165,460 + Atu0159 0.69 -0.6 165,460 + Atu0159 0.69 +0.0 165,460 + Atu0159 0.69 -2.1 165,460 + Atu0159 0.69 -0.1 165,468 - Atu0159 0.70 -1.2 165,468 - Atu0159 0.70 +0.3 165,468 - Atu0159 0.70 +0.7 165,468 - Atu0159 0.70 +1.9 165,472 - Atu0159 0.70 -0.6 165,527 - Atu0159 0.77 +0.3 165,527 - Atu0159 0.77 -1.2 165,532 + Atu0159 0.78 +1.6 165,605 + Atu0159 0.87 -0.2 165,615 + Atu0159 0.89 -0.7 165,632 - +2.4 165,647 + -2.1 165,739 - +0.9 165,799 + -0.9 165,818 - Atu0160 0.11 +0.2 165,839 + Atu0160 0.14 -1.0 165,885 + Atu0160 0.20 +0.2 165,926 - Atu0160 0.25 +0.1 165,933 + Atu0160 0.26 -0.1 166,046 - Atu0160 0.42 -2.1 166,069 - Atu0160 0.45 +0.4 166,107 - Atu0160 0.50 -0.1 166,137 + Atu0160 0.54 +0.8 166,282 + Atu0160 0.74 +0.4 166,452 + +1.6 166,452 + +0.5 166,700 + -2.1
Or see this region's nucleotide sequence