Experiment: AgroPhage_C10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4771 and Atu4772 are separated by 1 nucleotides Atu4772 and Atu4773 are separated by 324 nucleotides Atu4773 and Atu4774 are separated by 64 nucleotides
Atu4771: Atu4771 - oxalate decarboxylase, at 1,939,931 to 1,941,178
Atu4771
Atu4772: Atu4772 - hypothetical protein, at 1,941,180 to 1,941,644
Atu4772
Atu4773: Atu4773 - two component response regulator, at 1,941,969 to 1,942,343
Atu4773
Atu4774: Atu4774 - two component response regulator, at 1,942,408 to 1,943,064
Atu4774
Position (kb)
1941
1942 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1940.180 kb on + strand, within Atu4771 at 1940.217 kb on + strand, within Atu4771 at 1940.218 kb on - strand, within Atu4771 at 1940.320 kb on + strand, within Atu4771 at 1940.328 kb on + strand, within Atu4771 at 1940.328 kb on - strand, within Atu4771 at 1940.328 kb on - strand, within Atu4771 at 1940.333 kb on + strand, within Atu4771 at 1940.419 kb on + strand, within Atu4771 at 1940.445 kb on + strand, within Atu4771 at 1940.451 kb on - strand, within Atu4771 at 1940.505 kb on - strand, within Atu4771 at 1940.558 kb on + strand, within Atu4771 at 1940.978 kb on + strand, within Atu4771 at 1941.032 kb on + strand, within Atu4771 at 1941.230 kb on + strand, within Atu4772 at 1941.261 kb on - strand, within Atu4772 at 1941.277 kb on + strand, within Atu4772 at 1941.397 kb on + strand, within Atu4772 at 1941.472 kb on - strand, within Atu4772 at 1941.631 kb on - strand at 1941.648 kb on - strand at 1941.648 kb on - strand at 1941.648 kb on - strand at 1941.681 kb on - strand at 1941.747 kb on - strand at 1941.751 kb on + strand at 1941.914 kb on + strand at 1941.922 kb on - strand at 1941.924 kb on + strand at 1941.975 kb on - strand at 1942.026 kb on - strand, within Atu4773 at 1942.086 kb on - strand, within Atu4773 at 1942.316 kb on - strand at 1942.389 kb on - strand at 1942.548 kb on - strand, within Atu4774 at 1942.583 kb on + strand, within Atu4774 at 1942.599 kb on + strand, within Atu4774 at 1942.607 kb on - strand, within Atu4774
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C10 remove 1,940,180 + Atu4771 0.20 -2.3 1,940,217 + Atu4771 0.23 -0.2 1,940,218 - Atu4771 0.23 +1.1 1,940,320 + Atu4771 0.31 +1.0 1,940,328 + Atu4771 0.32 +0.2 1,940,328 - Atu4771 0.32 -1.7 1,940,328 - Atu4771 0.32 +0.7 1,940,333 + Atu4771 0.32 -0.4 1,940,419 + Atu4771 0.39 -0.6 1,940,445 + Atu4771 0.41 -0.0 1,940,451 - Atu4771 0.42 -0.6 1,940,505 - Atu4771 0.46 -2.6 1,940,558 + Atu4771 0.50 -2.8 1,940,978 + Atu4771 0.84 -0.6 1,941,032 + Atu4771 0.88 +0.4 1,941,230 + Atu4772 0.11 -0.6 1,941,261 - Atu4772 0.17 -1.1 1,941,277 + Atu4772 0.21 -1.2 1,941,397 + Atu4772 0.47 -0.7 1,941,472 - Atu4772 0.63 -1.3 1,941,631 - -0.6 1,941,648 - +0.9 1,941,648 - -0.7 1,941,648 - -0.1 1,941,681 - -0.1 1,941,747 - -1.6 1,941,751 + -0.1 1,941,914 + -0.4 1,941,922 - -0.3 1,941,924 + -0.5 1,941,975 - +0.3 1,942,026 - Atu4773 0.15 +0.1 1,942,086 - Atu4773 0.31 +1.0 1,942,316 - +0.3 1,942,389 - -0.5 1,942,548 - Atu4774 0.21 -0.4 1,942,583 + Atu4774 0.27 -3.7 1,942,599 + Atu4774 0.29 +0.6 1,942,607 - Atu4774 0.30 +0.4
Or see this region's nucleotide sequence