Experiment: AgroPhage_C10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3899 and Atu3900 are separated by 10 nucleotides Atu3900 and Atu3901 are separated by 214 nucleotides Atu3901 and Atu3902 are separated by 5 nucleotides
Atu3899: Atu3899 - siroheme synthase, at 994,814 to 996,241
Atu3899
Atu3900: Atu3900 - nitrate reductase large subunit, at 996,252 to 998,900
Atu3900
Atu3901: Atu3901 - nitrite reductase small subunit, at 999,115 to 999,450
Atu3901
Atu3902: Atu3902 - nitrite reductase large subunit, at 999,456 to 1,001,903
Atu3902
Position (kb) 996
997
998
999 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 995.341 kb on + strand, within Atu3899 at 995.349 kb on - strand, within Atu3899 at 995.407 kb on - strand, within Atu3899 at 995.472 kb on - strand, within Atu3899 at 995.489 kb on + strand, within Atu3899 at 995.509 kb on + strand, within Atu3899 at 995.548 kb on + strand, within Atu3899 at 995.557 kb on - strand, within Atu3899 at 995.567 kb on - strand, within Atu3899 at 995.650 kb on - strand, within Atu3899 at 995.725 kb on + strand, within Atu3899 at 995.768 kb on - strand, within Atu3899 at 995.780 kb on + strand, within Atu3899 at 995.846 kb on + strand, within Atu3899 at 995.846 kb on + strand, within Atu3899 at 995.942 kb on - strand, within Atu3899 at 995.942 kb on - strand, within Atu3899 at 995.942 kb on - strand, within Atu3899 at 995.980 kb on - strand, within Atu3899 at 995.980 kb on - strand, within Atu3899 at 996.001 kb on + strand, within Atu3899 at 996.045 kb on - strand, within Atu3899 at 996.143 kb on - strand at 996.160 kb on - strand at 996.160 kb on - strand at 996.235 kb on + strand at 996.273 kb on - strand at 996.350 kb on + strand at 996.533 kb on - strand, within Atu3900 at 996.575 kb on + strand, within Atu3900 at 996.687 kb on + strand, within Atu3900 at 996.695 kb on - strand, within Atu3900 at 996.821 kb on + strand, within Atu3900 at 996.879 kb on - strand, within Atu3900 at 996.952 kb on - strand, within Atu3900 at 996.967 kb on + strand, within Atu3900 at 996.967 kb on + strand, within Atu3900 at 996.970 kb on - strand, within Atu3900 at 996.975 kb on - strand, within Atu3900 at 996.992 kb on - strand, within Atu3900 at 996.992 kb on - strand, within Atu3900 at 997.121 kb on + strand, within Atu3900 at 997.129 kb on - strand, within Atu3900 at 997.170 kb on + strand, within Atu3900 at 997.392 kb on - strand, within Atu3900 at 997.401 kb on - strand, within Atu3900 at 997.431 kb on + strand, within Atu3900 at 997.451 kb on - strand, within Atu3900 at 997.497 kb on - strand, within Atu3900 at 997.604 kb on - strand, within Atu3900 at 997.621 kb on + strand, within Atu3900 at 997.634 kb on - strand, within Atu3900 at 997.634 kb on - strand, within Atu3900 at 997.661 kb on + strand, within Atu3900 at 997.740 kb on - strand, within Atu3900 at 997.783 kb on - strand, within Atu3900 at 997.818 kb on - strand, within Atu3900 at 997.857 kb on + strand, within Atu3900 at 997.990 kb on + strand, within Atu3900 at 997.998 kb on - strand, within Atu3900 at 998.011 kb on + strand, within Atu3900 at 998.021 kb on + strand, within Atu3900 at 998.021 kb on + strand, within Atu3900 at 998.100 kb on + strand, within Atu3900 at 998.143 kb on + strand, within Atu3900 at 998.201 kb on + strand, within Atu3900 at 998.201 kb on + strand, within Atu3900 at 998.209 kb on - strand, within Atu3900 at 998.209 kb on - strand, within Atu3900 at 998.329 kb on + strand, within Atu3900 at 998.337 kb on - strand, within Atu3900 at 998.350 kb on + strand, within Atu3900 at 998.449 kb on - strand, within Atu3900 at 998.489 kb on - strand, within Atu3900 at 998.521 kb on - strand, within Atu3900 at 998.762 kb on - strand at 998.902 kb on + strand at 998.932 kb on + strand at 998.957 kb on + strand at 999.054 kb on + strand at 999.081 kb on + strand at 999.081 kb on + strand at 999.089 kb on - strand at 999.209 kb on - strand, within Atu3901 at 999.209 kb on - strand, within Atu3901 at 999.278 kb on + strand, within Atu3901 at 999.350 kb on + strand, within Atu3901 at 999.350 kb on + strand, within Atu3901 at 999.350 kb on + strand, within Atu3901 at 999.350 kb on + strand, within Atu3901 at 999.363 kb on - strand, within Atu3901 at 999.494 kb on + strand at 999.501 kb on - strand at 999.501 kb on - strand at 999.501 kb on - strand at 999.538 kb on + strand at 999.594 kb on - strand at 999.626 kb on + strand at 999.688 kb on + strand at 999.696 kb on - strand at 999.696 kb on - strand at 999.696 kb on - strand at 999.736 kb on + strand, within Atu3902 at 999.744 kb on - strand, within Atu3902 at 999.744 kb on - strand, within Atu3902 at 999.744 kb on - strand, within Atu3902 at 999.755 kb on - strand, within Atu3902 at 999.815 kb on - strand, within Atu3902 at 999.849 kb on - strand, within Atu3902 at 999.892 kb on - strand, within Atu3902 at 999.899 kb on + strand, within Atu3902
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C10 remove 995,341 + Atu3899 0.37 +0.0 995,349 - Atu3899 0.37 +0.9 995,407 - Atu3899 0.42 -1.9 995,472 - Atu3899 0.46 +0.4 995,489 + Atu3899 0.47 -0.6 995,509 + Atu3899 0.49 +1.6 995,548 + Atu3899 0.51 +0.3 995,557 - Atu3899 0.52 -0.4 995,567 - Atu3899 0.53 -0.4 995,650 - Atu3899 0.59 -2.9 995,725 + Atu3899 0.64 -3.4 995,768 - Atu3899 0.67 -2.5 995,780 + Atu3899 0.68 -2.2 995,846 + Atu3899 0.72 -1.3 995,846 + Atu3899 0.72 +1.5 995,942 - Atu3899 0.79 -1.3 995,942 - Atu3899 0.79 +0.5 995,942 - Atu3899 0.79 -0.2 995,980 - Atu3899 0.82 +0.5 995,980 - Atu3899 0.82 +1.0 996,001 + Atu3899 0.83 -0.5 996,045 - Atu3899 0.86 -0.3 996,143 - -1.3 996,160 - +2.1 996,160 - -0.0 996,235 + +1.7 996,273 - +0.9 996,350 + +0.4 996,533 - Atu3900 0.11 -1.1 996,575 + Atu3900 0.12 -0.3 996,687 + Atu3900 0.16 -2.3 996,695 - Atu3900 0.17 -1.5 996,821 + Atu3900 0.21 +0.0 996,879 - Atu3900 0.24 -0.2 996,952 - Atu3900 0.26 +0.3 996,967 + Atu3900 0.27 +1.0 996,967 + Atu3900 0.27 +0.7 996,970 - Atu3900 0.27 +1.3 996,975 - Atu3900 0.27 +2.4 996,992 - Atu3900 0.28 -0.2 996,992 - Atu3900 0.28 +0.3 997,121 + Atu3900 0.33 -0.3 997,129 - Atu3900 0.33 -1.0 997,170 + Atu3900 0.35 -0.6 997,392 - Atu3900 0.43 +0.0 997,401 - Atu3900 0.43 -0.1 997,431 + Atu3900 0.45 -0.4 997,451 - Atu3900 0.45 -0.5 997,497 - Atu3900 0.47 +1.3 997,604 - Atu3900 0.51 +0.5 997,621 + Atu3900 0.52 +0.2 997,634 - Atu3900 0.52 -0.2 997,634 - Atu3900 0.52 -0.4 997,661 + Atu3900 0.53 +0.3 997,740 - Atu3900 0.56 +0.9 997,783 - Atu3900 0.58 -0.7 997,818 - Atu3900 0.59 -0.3 997,857 + Atu3900 0.61 -0.2 997,990 + Atu3900 0.66 -2.0 997,998 - Atu3900 0.66 +1.7 998,011 + Atu3900 0.66 -0.5 998,021 + Atu3900 0.67 +0.9 998,021 + Atu3900 0.67 -0.1 998,100 + Atu3900 0.70 -0.1 998,143 + Atu3900 0.71 -1.7 998,201 + Atu3900 0.74 +0.5 998,201 + Atu3900 0.74 +1.0 998,209 - Atu3900 0.74 +2.0 998,209 - Atu3900 0.74 -2.6 998,329 + Atu3900 0.78 -1.0 998,337 - Atu3900 0.79 +0.5 998,350 + Atu3900 0.79 -1.6 998,449 - Atu3900 0.83 -0.5 998,489 - Atu3900 0.84 -2.2 998,521 - Atu3900 0.86 -0.5 998,762 - -0.7 998,902 + +0.2 998,932 + -1.0 998,957 + -3.2 999,054 + +0.7 999,081 + -2.4 999,081 + -2.5 999,089 - +3.3 999,209 - Atu3901 0.28 +0.3 999,209 - Atu3901 0.28 -2.3 999,278 + Atu3901 0.49 -0.6 999,350 + Atu3901 0.70 -1.9 999,350 + Atu3901 0.70 -0.5 999,350 + Atu3901 0.70 -0.9 999,350 + Atu3901 0.70 -0.3 999,363 - Atu3901 0.74 +0.2 999,494 + -0.3 999,501 - +0.3 999,501 - +1.1 999,501 - -0.1 999,538 + -2.8 999,594 - -1.5 999,626 + -1.1 999,688 + +0.9 999,696 - -1.0 999,696 - +1.2 999,696 - -0.8 999,736 + Atu3902 0.11 -2.5 999,744 - Atu3902 0.12 -0.7 999,744 - Atu3902 0.12 +0.8 999,744 - Atu3902 0.12 -1.1 999,755 - Atu3902 0.12 +0.3 999,815 - Atu3902 0.15 +0.7 999,849 - Atu3902 0.16 -0.8 999,892 - Atu3902 0.18 -1.9 999,899 + Atu3902 0.18 +0.9
Or see this region's nucleotide sequence