Experiment: AgroPhage_C10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3796 and Atu3797 overlap by 1 nucleotides Atu3797 and Atu3798 are separated by 305 nucleotides Atu3798 and Atu3799 are separated by 35 nucleotides
Atu3796: Atu3796 - efflux protein, at 891,337 to 892,422
Atu3796
Atu3797: Atu3797 - HlyD family secretion protein, at 892,422 to 893,498
Atu3797
Atu3798: Atu3798 - TetR family transcriptional regulator, at 893,804 to 894,418
Atu3798
Atu3799: Atu3799 - GntR family transcriptional regulator, at 894,454 to 895,437
Atu3799
Position (kb) 892
893
894 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 891.446 kb on + strand, within Atu3796 at 891.503 kb on - strand, within Atu3796 at 891.629 kb on - strand, within Atu3796 at 891.716 kb on - strand, within Atu3796 at 891.758 kb on - strand, within Atu3796 at 891.798 kb on + strand, within Atu3796 at 891.807 kb on - strand, within Atu3796 at 891.827 kb on - strand, within Atu3796 at 891.901 kb on + strand, within Atu3796 at 891.921 kb on + strand, within Atu3796 at 891.928 kb on + strand, within Atu3796 at 891.959 kb on + strand, within Atu3796 at 892.002 kb on + strand, within Atu3796 at 892.005 kb on - strand, within Atu3796 at 892.055 kb on + strand, within Atu3796 at 892.055 kb on + strand, within Atu3796 at 892.063 kb on - strand, within Atu3796 at 892.073 kb on - strand, within Atu3796 at 892.073 kb on - strand, within Atu3796 at 892.186 kb on - strand, within Atu3796 at 892.255 kb on - strand, within Atu3796 at 892.258 kb on + strand, within Atu3796 at 892.300 kb on - strand, within Atu3796 at 892.408 kb on + strand at 892.509 kb on - strand at 892.514 kb on + strand at 892.517 kb on - strand at 892.556 kb on + strand, within Atu3797 at 892.559 kb on - strand, within Atu3797 at 892.635 kb on - strand, within Atu3797 at 892.729 kb on + strand, within Atu3797 at 892.729 kb on + strand, within Atu3797 at 892.729 kb on + strand, within Atu3797 at 892.737 kb on - strand, within Atu3797 at 892.737 kb on - strand, within Atu3797 at 892.747 kb on + strand, within Atu3797 at 892.782 kb on + strand, within Atu3797 at 892.995 kb on - strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 892.999 kb on + strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.007 kb on - strand, within Atu3797 at 893.034 kb on + strand, within Atu3797 at 893.042 kb on - strand, within Atu3797 at 893.042 kb on - strand, within Atu3797 at 893.098 kb on - strand, within Atu3797 at 893.116 kb on + strand, within Atu3797 at 893.313 kb on + strand, within Atu3797 at 893.313 kb on + strand, within Atu3797 at 893.331 kb on - strand, within Atu3797 at 893.394 kb on + strand at 893.505 kb on + strand at 893.634 kb on + strand at 893.721 kb on + strand at 893.723 kb on + strand at 893.723 kb on + strand at 893.729 kb on - strand at 893.749 kb on - strand at 893.766 kb on + strand at 893.870 kb on + strand, within Atu3798 at 893.945 kb on - strand, within Atu3798 at 893.948 kb on + strand, within Atu3798 at 893.986 kb on + strand, within Atu3798 at 894.051 kb on + strand, within Atu3798 at 894.294 kb on - strand, within Atu3798 at 894.323 kb on - strand, within Atu3798 at 894.384 kb on + strand at 894.384 kb on + strand at 894.392 kb on - strand at 894.402 kb on - strand at 894.415 kb on - strand at 894.415 kb on - strand at 894.415 kb on - strand at 894.415 kb on - strand at 894.415 kb on - strand at 894.485 kb on + strand at 894.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C10 remove 891,446 + Atu3796 0.10 -1.0 891,503 - Atu3796 0.15 -1.6 891,629 - Atu3796 0.27 +0.4 891,716 - Atu3796 0.35 +0.1 891,758 - Atu3796 0.39 -2.1 891,798 + Atu3796 0.42 +0.0 891,807 - Atu3796 0.43 -1.5 891,827 - Atu3796 0.45 +0.1 891,901 + Atu3796 0.52 +0.2 891,921 + Atu3796 0.54 +0.1 891,928 + Atu3796 0.54 -1.8 891,959 + Atu3796 0.57 +1.1 892,002 + Atu3796 0.61 +0.4 892,005 - Atu3796 0.62 -0.0 892,055 + Atu3796 0.66 +0.9 892,055 + Atu3796 0.66 -0.1 892,063 - Atu3796 0.67 -0.7 892,073 - Atu3796 0.68 -1.5 892,073 - Atu3796 0.68 -1.5 892,186 - Atu3796 0.78 +0.1 892,255 - Atu3796 0.85 +0.2 892,258 + Atu3796 0.85 -0.1 892,300 - Atu3796 0.89 -0.7 892,408 + +0.8 892,509 - -1.2 892,514 + -1.6 892,517 - -1.2 892,556 + Atu3797 0.12 -0.4 892,559 - Atu3797 0.13 -0.7 892,635 - Atu3797 0.20 -0.6 892,729 + Atu3797 0.29 -0.8 892,729 + Atu3797 0.29 +1.2 892,729 + Atu3797 0.29 +0.2 892,737 - Atu3797 0.29 -2.3 892,737 - Atu3797 0.29 -2.1 892,747 + Atu3797 0.30 +0.4 892,782 + Atu3797 0.33 -0.4 892,995 - Atu3797 0.53 -0.5 892,999 + Atu3797 0.54 +1.3 892,999 + Atu3797 0.54 +0.1 892,999 + Atu3797 0.54 +0.2 892,999 + Atu3797 0.54 +4.3 892,999 + Atu3797 0.54 +0.4 892,999 + Atu3797 0.54 -3.2 893,007 - Atu3797 0.54 -0.4 893,007 - Atu3797 0.54 -2.1 893,007 - Atu3797 0.54 -0.3 893,007 - Atu3797 0.54 -2.5 893,007 - Atu3797 0.54 +1.7 893,007 - Atu3797 0.54 -1.3 893,007 - Atu3797 0.54 +0.4 893,034 + Atu3797 0.57 -1.5 893,042 - Atu3797 0.58 +0.4 893,042 - Atu3797 0.58 -2.1 893,098 - Atu3797 0.63 -0.3 893,116 + Atu3797 0.64 +1.6 893,313 + Atu3797 0.83 -1.4 893,313 + Atu3797 0.83 +0.5 893,331 - Atu3797 0.84 +1.1 893,394 + +0.1 893,505 + +1.1 893,634 + +0.4 893,721 + +0.8 893,723 + +0.2 893,723 + -0.2 893,729 - -3.3 893,749 - +0.9 893,766 + -0.0 893,870 + Atu3798 0.11 +1.4 893,945 - Atu3798 0.23 +1.8 893,948 + Atu3798 0.23 +3.5 893,986 + Atu3798 0.30 -0.0 894,051 + Atu3798 0.40 +1.1 894,294 - Atu3798 0.80 +0.7 894,323 - Atu3798 0.84 +1.2 894,384 + -0.1 894,384 + -1.9 894,392 - +0.2 894,402 - -2.3 894,415 - -0.1 894,415 - +1.1 894,415 - +0.8 894,415 - -0.0 894,415 - -0.1 894,485 + -0.4 894,487 + -1.6
Or see this region's nucleotide sequence