Experiment: AgroPhage_C10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3581 and Atu3582 are separated by 4 nucleotides Atu3582 and Atu3583 are separated by 17 nucleotides Atu3583 and Atu8189 are separated by 34 nucleotides
Atu3581: Atu3581 - propionyl-coenzyme A carboxylase, alpha polypeptide, at 636,779 to 638,782
Atu3581
Atu3582: Atu3582 - hypothetical protein, at 638,787 to 639,206
Atu3582
Atu3583: Atu3583 - hypothetical protein, at 639,224 to 639,784
Atu3583
Atu8189: Atu8189 - hypothetical protein, at 639,819 to 640,196
Atu8189
Position (kb) 638
639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 637.788 kb on + strand, within Atu3581 at 637.803 kb on - strand, within Atu3581 at 637.834 kb on + strand, within Atu3581 at 638.038 kb on + strand, within Atu3581 at 638.107 kb on - strand, within Atu3581 at 638.224 kb on + strand, within Atu3581 at 638.277 kb on + strand, within Atu3581 at 638.277 kb on + strand, within Atu3581 at 638.315 kb on - strand, within Atu3581 at 638.372 kb on - strand, within Atu3581 at 638.382 kb on - strand, within Atu3581 at 638.385 kb on - strand, within Atu3581 at 638.599 kb on + strand at 638.601 kb on + strand at 638.601 kb on + strand at 638.601 kb on + strand at 638.607 kb on - strand at 638.609 kb on - strand at 638.628 kb on - strand at 638.638 kb on - strand at 638.638 kb on - strand at 638.688 kb on - strand at 638.877 kb on + strand, within Atu3582 at 638.970 kb on + strand, within Atu3582 at 639.011 kb on + strand, within Atu3582 at 639.013 kb on + strand, within Atu3582 at 639.016 kb on + strand, within Atu3582 at 639.026 kb on + strand, within Atu3582 at 639.186 kb on + strand at 639.338 kb on + strand, within Atu3583 at 639.346 kb on - strand, within Atu3583 at 639.346 kb on - strand, within Atu3583 at 639.463 kb on + strand, within Atu3583 at 639.582 kb on + strand, within Atu3583 at 639.590 kb on - strand, within Atu3583 at 639.743 kb on + strand at 639.748 kb on + strand at 639.756 kb on - strand at 639.756 kb on - strand at 639.756 kb on - strand at 639.855 kb on + strand at 639.887 kb on - strand, within Atu8189 at 639.894 kb on - strand, within Atu8189 at 639.894 kb on - strand, within Atu8189 at 640.041 kb on + strand, within Atu8189 at 640.056 kb on + strand, within Atu8189 at 640.099 kb on - strand, within Atu8189 at 640.204 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C10 remove 637,788 + Atu3581 0.50 +0.4 637,803 - Atu3581 0.51 +1.8 637,834 + Atu3581 0.53 -1.1 638,038 + Atu3581 0.63 -0.5 638,107 - Atu3581 0.66 -0.4 638,224 + Atu3581 0.72 -0.0 638,277 + Atu3581 0.75 +0.2 638,277 + Atu3581 0.75 +1.1 638,315 - Atu3581 0.77 +1.3 638,372 - Atu3581 0.79 -1.1 638,382 - Atu3581 0.80 -0.7 638,385 - Atu3581 0.80 -0.4 638,599 + +2.1 638,601 + -0.7 638,601 + +0.1 638,601 + -3.1 638,607 - -0.5 638,609 - -0.7 638,628 - -0.7 638,638 - -0.8 638,638 - -0.2 638,688 - -1.8 638,877 + Atu3582 0.21 +0.1 638,970 + Atu3582 0.44 +0.4 639,011 + Atu3582 0.53 +0.0 639,013 + Atu3582 0.54 -1.4 639,016 + Atu3582 0.55 -1.8 639,026 + Atu3582 0.57 +0.5 639,186 + -1.6 639,338 + Atu3583 0.20 -1.0 639,346 - Atu3583 0.22 -0.1 639,346 - Atu3583 0.22 +1.7 639,463 + Atu3583 0.43 -2.5 639,582 + Atu3583 0.64 +0.8 639,590 - Atu3583 0.65 -0.8 639,743 + -0.3 639,748 + -2.3 639,756 - +0.9 639,756 - +0.3 639,756 - -0.5 639,855 + +0.6 639,887 - Atu8189 0.18 -0.3 639,894 - Atu8189 0.20 -1.4 639,894 - Atu8189 0.20 +0.2 640,041 + Atu8189 0.59 -1.6 640,056 + Atu8189 0.63 -0.7 640,099 - Atu8189 0.74 +0.4 640,204 + -2.0
Or see this region's nucleotide sequence