Experiment: AgroPhage_C10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3475 and Atu3476 are separated by 108 nucleotides Atu3476 and Atu3477 are separated by 79 nucleotides Atu3477 and Atu3478 are separated by 8 nucleotides
Atu3475: Atu3475 - acetyl-CoA C-acetyltransferase, at 522,624 to 523,862
Atu3475
Atu3476: Atu3476 - AsnC family transcriptional regulator, at 523,971 to 524,444
Atu3476
Atu3477: Atu3477 - acyl-CoA dehydrogenase, at 524,524 to 525,696
Atu3477
Atu3478: Atu3478 - 3-methylcrotonoyl-CoA carboxylase beta subunit, at 525,705 to 527,306
Atu3478
Position (kb) 524
525
526 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 523.603 kb on + strand, within Atu3475 at 523.781 kb on - strand at 523.783 kb on + strand at 523.842 kb on + strand at 523.842 kb on + strand at 523.842 kb on + strand at 523.850 kb on - strand at 523.850 kb on - strand at 523.850 kb on - strand at 524.068 kb on + strand, within Atu3476 at 524.072 kb on - strand, within Atu3476 at 524.076 kb on - strand, within Atu3476 at 524.114 kb on - strand, within Atu3476 at 524.123 kb on + strand, within Atu3476 at 524.201 kb on + strand, within Atu3476 at 524.268 kb on - strand, within Atu3476 at 524.273 kb on - strand, within Atu3476 at 524.458 kb on + strand at 524.536 kb on - strand at 524.690 kb on - strand, within Atu3477 at 524.710 kb on - strand, within Atu3477 at 524.721 kb on + strand, within Atu3477 at 524.739 kb on + strand, within Atu3477 at 524.823 kb on + strand, within Atu3477 at 524.823 kb on + strand, within Atu3477 at 524.831 kb on - strand, within Atu3477 at 524.831 kb on - strand, within Atu3477 at 524.973 kb on + strand, within Atu3477 at 524.973 kb on + strand, within Atu3477 at 524.981 kb on - strand, within Atu3477 at 524.987 kb on - strand, within Atu3477 at 525.069 kb on - strand, within Atu3477 at 525.112 kb on + strand, within Atu3477 at 525.133 kb on + strand, within Atu3477 at 525.173 kb on + strand, within Atu3477 at 525.181 kb on - strand, within Atu3477 at 525.441 kb on + strand, within Atu3477 at 525.456 kb on - strand, within Atu3477 at 525.466 kb on + strand, within Atu3477 at 525.487 kb on - strand, within Atu3477 at 525.676 kb on - strand at 525.678 kb on + strand at 525.678 kb on + strand at 525.678 kb on + strand at 525.685 kb on + strand at 525.686 kb on - strand at 525.686 kb on - strand at 525.686 kb on - strand at 525.686 kb on - strand at 525.692 kb on + strand at 525.771 kb on + strand at 526.053 kb on - strand, within Atu3478 at 526.085 kb on + strand, within Atu3478 at 526.146 kb on - strand, within Atu3478 at 526.233 kb on + strand, within Atu3478 at 526.258 kb on + strand, within Atu3478 at 526.352 kb on + strand, within Atu3478 at 526.379 kb on - strand, within Atu3478 at 526.389 kb on + strand, within Atu3478 at 526.474 kb on - strand, within Atu3478 at 526.509 kb on - strand, within Atu3478 at 526.565 kb on + strand, within Atu3478 at 526.570 kb on + strand, within Atu3478 at 526.622 kb on - strand, within Atu3478 at 526.632 kb on - strand, within Atu3478 at 526.682 kb on - strand, within Atu3478
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C10 remove 523,603 + Atu3475 0.79 -0.5 523,781 - +0.5 523,783 + -0.1 523,842 + +0.9 523,842 + +1.0 523,842 + +0.2 523,850 - -0.7 523,850 - +0.6 523,850 - -0.2 524,068 + Atu3476 0.20 +0.8 524,072 - Atu3476 0.21 +3.1 524,076 - Atu3476 0.22 +0.1 524,114 - Atu3476 0.30 -1.7 524,123 + Atu3476 0.32 -0.0 524,201 + Atu3476 0.49 +0.5 524,268 - Atu3476 0.63 +0.7 524,273 - Atu3476 0.64 -0.1 524,458 + -1.4 524,536 - -0.8 524,690 - Atu3477 0.14 +0.6 524,710 - Atu3477 0.16 +1.4 524,721 + Atu3477 0.17 -2.0 524,739 + Atu3477 0.18 -0.1 524,823 + Atu3477 0.25 -2.7 524,823 + Atu3477 0.25 +0.3 524,831 - Atu3477 0.26 -0.6 524,831 - Atu3477 0.26 -0.5 524,973 + Atu3477 0.38 -0.8 524,973 + Atu3477 0.38 -0.9 524,981 - Atu3477 0.39 +1.0 524,987 - Atu3477 0.39 +0.5 525,069 - Atu3477 0.46 -0.8 525,112 + Atu3477 0.50 -1.3 525,133 + Atu3477 0.52 -0.6 525,173 + Atu3477 0.55 -0.2 525,181 - Atu3477 0.56 +0.0 525,441 + Atu3477 0.78 -0.8 525,456 - Atu3477 0.79 -0.2 525,466 + Atu3477 0.80 -1.0 525,487 - Atu3477 0.82 -1.1 525,676 - -0.3 525,678 + +1.5 525,678 + +1.5 525,678 + +0.6 525,685 + -0.8 525,686 - -1.5 525,686 - -0.5 525,686 - -1.0 525,686 - -3.0 525,692 + +0.5 525,771 + -0.7 526,053 - Atu3478 0.22 +0.1 526,085 + Atu3478 0.24 -1.9 526,146 - Atu3478 0.28 -2.5 526,233 + Atu3478 0.33 -2.2 526,258 + Atu3478 0.35 +0.9 526,352 + Atu3478 0.40 -0.9 526,379 - Atu3478 0.42 +1.0 526,389 + Atu3478 0.43 -2.3 526,474 - Atu3478 0.48 -0.6 526,509 - Atu3478 0.50 -0.2 526,565 + Atu3478 0.54 -0.3 526,570 + Atu3478 0.54 -1.4 526,622 - Atu3478 0.57 +0.3 526,632 - Atu3478 0.58 -1.4 526,682 - Atu3478 0.61 -1.3
Or see this region's nucleotide sequence