Experiment: AgroPhage_C10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3444 and Atu3445 overlap by 8 nucleotides Atu3445 and Atu3446 are separated by 93 nucleotides
Atu3444: Atu3444 - oligopeptide ABC transporter substrate-binding protein, at 491,750 to 493,381
Atu3444
Atu3445: Atu3445 - hippurate hydrolase, at 493,374 to 494,573
Atu3445
Atu3446: Atu3446 - monooxygenase, at 494,667 to 495,836
Atu3446
Position (kb) 493
494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 492.429 kb on + strand, within Atu3444 at 492.442 kb on - strand, within Atu3444 at 492.458 kb on - strand, within Atu3444 at 492.471 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.522 kb on + strand, within Atu3444 at 492.530 kb on - strand, within Atu3444 at 492.530 kb on - strand, within Atu3444 at 492.530 kb on - strand, within Atu3444 at 492.530 kb on - strand, within Atu3444 at 492.573 kb on + strand, within Atu3444 at 492.573 kb on + strand, within Atu3444 at 492.573 kb on + strand, within Atu3444 at 492.575 kb on + strand, within Atu3444 at 492.581 kb on + strand, within Atu3444 at 492.754 kb on + strand, within Atu3444 at 492.892 kb on - strand, within Atu3444 at 492.955 kb on + strand, within Atu3444 at 492.979 kb on - strand, within Atu3444 at 492.997 kb on + strand, within Atu3444 at 493.040 kb on - strand, within Atu3444 at 493.042 kb on + strand, within Atu3444 at 493.050 kb on + strand, within Atu3444 at 493.050 kb on + strand, within Atu3444 at 493.050 kb on - strand, within Atu3444 at 493.057 kb on - strand, within Atu3444 at 493.112 kb on - strand, within Atu3444 at 493.153 kb on + strand, within Atu3444 at 493.297 kb on + strand at 493.389 kb on - strand at 493.393 kb on + strand at 493.477 kb on + strand at 493.622 kb on - strand, within Atu3445 at 493.638 kb on + strand, within Atu3445 at 493.683 kb on + strand, within Atu3445 at 493.766 kb on - strand, within Atu3445 at 493.856 kb on + strand, within Atu3445 at 493.887 kb on - strand, within Atu3445 at 493.896 kb on - strand, within Atu3445 at 493.954 kb on + strand, within Atu3445 at 493.962 kb on - strand, within Atu3445 at 493.997 kb on + strand, within Atu3445 at 494.039 kb on + strand, within Atu3445 at 494.047 kb on - strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.135 kb on - strand, within Atu3445 at 494.207 kb on + strand, within Atu3445 at 494.225 kb on - strand, within Atu3445 at 494.230 kb on - strand, within Atu3445 at 494.244 kb on - strand, within Atu3445 at 494.271 kb on - strand, within Atu3445 at 494.374 kb on - strand, within Atu3445 at 494.429 kb on + strand, within Atu3445 at 494.436 kb on + strand, within Atu3445 at 494.479 kb on - strand at 494.507 kb on + strand at 494.665 kb on + strand at 494.856 kb on + strand, within Atu3446 at 494.893 kb on - strand, within Atu3446 at 495.018 kb on - strand, within Atu3446 at 495.062 kb on - strand, within Atu3446 at 495.259 kb on - strand, within Atu3446 at 495.264 kb on - strand, within Atu3446
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C10 remove 492,429 + Atu3444 0.42 +0.8 492,442 - Atu3444 0.42 +0.5 492,458 - Atu3444 0.43 +0.3 492,471 + Atu3444 0.44 -0.6 492,522 + Atu3444 0.47 +1.6 492,522 + Atu3444 0.47 +0.9 492,522 + Atu3444 0.47 -3.1 492,522 + Atu3444 0.47 -1.2 492,522 + Atu3444 0.47 +1.1 492,530 - Atu3444 0.48 -0.0 492,530 - Atu3444 0.48 +0.8 492,530 - Atu3444 0.48 +0.1 492,530 - Atu3444 0.48 +0.7 492,573 + Atu3444 0.50 +0.4 492,573 + Atu3444 0.50 -0.2 492,573 + Atu3444 0.50 +1.8 492,575 + Atu3444 0.51 -0.8 492,581 + Atu3444 0.51 -0.3 492,754 + Atu3444 0.62 -0.3 492,892 - Atu3444 0.70 +0.3 492,955 + Atu3444 0.74 -1.7 492,979 - Atu3444 0.75 +0.4 492,997 + Atu3444 0.76 -0.6 493,040 - Atu3444 0.79 -1.0 493,042 + Atu3444 0.79 -1.1 493,050 + Atu3444 0.80 +0.0 493,050 + Atu3444 0.80 +0.1 493,050 - Atu3444 0.80 +1.0 493,057 - Atu3444 0.80 +0.2 493,112 - Atu3444 0.83 +0.2 493,153 + Atu3444 0.86 +0.1 493,297 + +0.2 493,389 - +0.1 493,393 + +0.6 493,477 + +0.0 493,622 - Atu3445 0.21 +0.1 493,638 + Atu3445 0.22 +0.8 493,683 + Atu3445 0.26 +0.9 493,766 - Atu3445 0.33 -1.0 493,856 + Atu3445 0.40 +0.9 493,887 - Atu3445 0.43 -0.1 493,896 - Atu3445 0.43 +0.6 493,954 + Atu3445 0.48 -0.4 493,962 - Atu3445 0.49 -0.9 493,997 + Atu3445 0.52 -0.2 494,039 + Atu3445 0.55 +2.0 494,047 - Atu3445 0.56 -1.7 494,118 + Atu3445 0.62 -0.6 494,118 + Atu3445 0.62 +1.7 494,118 + Atu3445 0.62 +0.4 494,118 + Atu3445 0.62 -1.5 494,118 + Atu3445 0.62 -1.0 494,135 - Atu3445 0.63 -1.1 494,207 + Atu3445 0.69 +0.2 494,225 - Atu3445 0.71 +1.7 494,230 - Atu3445 0.71 +0.3 494,244 - Atu3445 0.72 +0.7 494,271 - Atu3445 0.75 -0.6 494,374 - Atu3445 0.83 -0.4 494,429 + Atu3445 0.88 +0.0 494,436 + Atu3445 0.89 -1.4 494,479 - -1.2 494,507 + -2.4 494,665 + +0.0 494,856 + Atu3446 0.16 +0.6 494,893 - Atu3446 0.19 +0.7 495,018 - Atu3446 0.30 -1.0 495,062 - Atu3446 0.34 +0.6 495,259 - Atu3446 0.51 -0.1 495,264 - Atu3446 0.51 -0.3
Or see this region's nucleotide sequence