Experiment: AgroPhage_C10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3426 and Atu3427 are separated by 129 nucleotides Atu3427 and Atu3428 are separated by 52 nucleotides Atu3428 and Atu3429 are separated by 201 nucleotides
Atu3426: Atu3426 - sulfonate monooxygenase, at 472,801 to 473,970
Atu3426
Atu3427: Atu3427 - hypothetical protein, at 474,100 to 474,417
Atu3427
Atu3428: Atu3428 - hypothetical protein, at 474,470 to 475,087
Atu3428
Atu3429: Atu3429 - hypothetical protein, at 475,289 to 475,477
Atu3429
Position (kb) 474
475 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 473.234 kb on + strand, within Atu3426 at 473.241 kb on - strand, within Atu3426 at 473.241 kb on - strand, within Atu3426 at 473.272 kb on - strand, within Atu3426 at 473.276 kb on - strand, within Atu3426 at 473.282 kb on - strand, within Atu3426 at 473.363 kb on + strand, within Atu3426 at 473.368 kb on + strand, within Atu3426 at 473.368 kb on + strand, within Atu3426 at 473.494 kb on - strand, within Atu3426 at 473.594 kb on - strand, within Atu3426 at 473.680 kb on + strand, within Atu3426 at 473.688 kb on - strand, within Atu3426 at 473.688 kb on - strand, within Atu3426 at 473.688 kb on - strand, within Atu3426 at 473.753 kb on - strand, within Atu3426 at 473.757 kb on + strand, within Atu3426 at 473.834 kb on - strand, within Atu3426 at 473.834 kb on - strand, within Atu3426 at 474.015 kb on + strand at 474.131 kb on + strand at 474.132 kb on - strand, within Atu3427 at 474.139 kb on + strand, within Atu3427 at 474.290 kb on - strand, within Atu3427 at 474.305 kb on - strand, within Atu3427 at 474.352 kb on + strand, within Atu3427 at 474.443 kb on + strand at 474.489 kb on + strand at 474.537 kb on - strand, within Atu3428 at 474.572 kb on + strand, within Atu3428 at 474.628 kb on + strand, within Atu3428 at 474.724 kb on + strand, within Atu3428 at 474.777 kb on + strand, within Atu3428 at 474.792 kb on + strand, within Atu3428 at 474.816 kb on + strand, within Atu3428 at 474.834 kb on + strand, within Atu3428 at 474.880 kb on - strand, within Atu3428 at 474.946 kb on + strand, within Atu3428 at 475.053 kb on - strand at 475.063 kb on - strand at 475.063 kb on - strand at 475.088 kb on - strand at 475.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C10 remove 473,234 + Atu3426 0.37 -2.0 473,241 - Atu3426 0.38 -1.1 473,241 - Atu3426 0.38 -1.9 473,272 - Atu3426 0.40 -1.3 473,276 - Atu3426 0.41 -3.3 473,282 - Atu3426 0.41 -0.3 473,363 + Atu3426 0.48 -0.6 473,368 + Atu3426 0.48 +0.7 473,368 + Atu3426 0.48 -0.2 473,494 - Atu3426 0.59 +0.7 473,594 - Atu3426 0.68 +0.5 473,680 + Atu3426 0.75 -0.8 473,688 - Atu3426 0.76 +2.4 473,688 - Atu3426 0.76 +0.1 473,688 - Atu3426 0.76 +4.3 473,753 - Atu3426 0.81 +0.3 473,757 + Atu3426 0.82 +1.9 473,834 - Atu3426 0.88 -0.2 473,834 - Atu3426 0.88 -1.7 474,015 + -0.3 474,131 + -1.2 474,132 - Atu3427 0.10 +1.5 474,139 + Atu3427 0.12 +1.9 474,290 - Atu3427 0.60 -0.3 474,305 - Atu3427 0.64 -0.6 474,352 + Atu3427 0.79 +0.5 474,443 + -0.3 474,489 + -1.1 474,537 - Atu3428 0.11 +2.6 474,572 + Atu3428 0.17 +2.3 474,628 + Atu3428 0.26 -0.8 474,724 + Atu3428 0.41 +0.3 474,777 + Atu3428 0.50 +1.0 474,792 + Atu3428 0.52 -0.6 474,816 + Atu3428 0.56 -0.9 474,834 + Atu3428 0.59 -1.8 474,880 - Atu3428 0.66 -0.4 474,946 + Atu3428 0.77 +0.3 475,053 - -1.2 475,063 - +0.7 475,063 - +1.1 475,088 - +0.2 475,092 + +0.1
Or see this region's nucleotide sequence