Experiment: AgroPhage_C10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3185 and Atu3186 are separated by 70 nucleotides Atu3186 and Atu3187 are separated by 9 nucleotides Atu3187 and Atu3188 overlap by 1 nucleotides
Atu3185: Atu3185 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 194,587 to 195,906
Atu3185
Atu3186: Atu3186 - glycerol-3-phosphate ABC transporter permease, at 195,977 to 196,858
Atu3186
Atu3187: Atu3187 - glycerol-3-phosphate ABC transporter permease, at 196,868 to 197,716
Atu3187
Atu3188: Atu3188 - glycerol-3-phosphate transporter ATP-binding subunit, at 197,716 to 198,777
Atu3188
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 195.970 kb on - strand at 195.975 kb on - strand at 196.004 kb on + strand at 196.115 kb on - strand, within Atu3186 at 196.115 kb on - strand, within Atu3186 at 196.172 kb on + strand, within Atu3186 at 196.189 kb on + strand, within Atu3186 at 196.194 kb on + strand, within Atu3186 at 196.198 kb on + strand, within Atu3186 at 196.204 kb on - strand, within Atu3186 at 196.204 kb on - strand, within Atu3186 at 196.286 kb on - strand, within Atu3186 at 196.381 kb on + strand, within Atu3186 at 196.391 kb on + strand, within Atu3186 at 196.404 kb on - strand, within Atu3186 at 196.576 kb on + strand, within Atu3186 at 196.584 kb on - strand, within Atu3186 at 196.665 kb on + strand, within Atu3186 at 196.729 kb on + strand, within Atu3186 at 196.805 kb on + strand at 196.847 kb on + strand at 197.004 kb on + strand, within Atu3187 at 197.004 kb on + strand, within Atu3187 at 197.027 kb on - strand, within Atu3187 at 197.109 kb on - strand, within Atu3187 at 197.265 kb on + strand, within Atu3187 at 197.309 kb on - strand, within Atu3187 at 197.397 kb on - strand, within Atu3187 at 197.429 kb on - strand, within Atu3187 at 197.510 kb on - strand, within Atu3187 at 197.604 kb on - strand, within Atu3187 at 197.606 kb on + strand, within Atu3187 at 197.606 kb on + strand, within Atu3187 at 197.652 kb on - strand at 197.677 kb on + strand at 197.694 kb on + strand at 197.770 kb on + strand at 197.778 kb on - strand at 197.898 kb on + strand, within Atu3188 at 197.958 kb on - strand, within Atu3188 at 198.032 kb on - strand, within Atu3188 at 198.059 kb on + strand, within Atu3188 at 198.059 kb on + strand, within Atu3188 at 198.140 kb on - strand, within Atu3188 at 198.145 kb on + strand, within Atu3188 at 198.220 kb on - strand, within Atu3188 at 198.226 kb on + strand, within Atu3188 at 198.290 kb on + strand, within Atu3188 at 198.300 kb on + strand, within Atu3188 at 198.376 kb on - strand, within Atu3188 at 198.470 kb on - strand, within Atu3188 at 198.544 kb on - strand, within Atu3188 at 198.593 kb on - strand, within Atu3188 at 198.595 kb on + strand, within Atu3188 at 198.595 kb on + strand, within Atu3188 at 198.632 kb on + strand, within Atu3188 at 198.640 kb on - strand, within Atu3188 at 198.640 kb on - strand, within Atu3188 at 198.689 kb on + strand at 198.689 kb on + strand at 198.689 kb on + strand at 198.689 kb on + strand at 198.694 kb on + strand at 198.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C10 remove 195,970 - +0.8 195,975 - -1.9 196,004 + -2.3 196,115 - Atu3186 0.16 +1.1 196,115 - Atu3186 0.16 -0.2 196,172 + Atu3186 0.22 -1.7 196,189 + Atu3186 0.24 +0.1 196,194 + Atu3186 0.25 -2.3 196,198 + Atu3186 0.25 -1.7 196,204 - Atu3186 0.26 -0.9 196,204 - Atu3186 0.26 -3.2 196,286 - Atu3186 0.35 -0.8 196,381 + Atu3186 0.46 -0.1 196,391 + Atu3186 0.47 +0.2 196,404 - Atu3186 0.48 -0.7 196,576 + Atu3186 0.68 -0.5 196,584 - Atu3186 0.69 -0.9 196,665 + Atu3186 0.78 -0.8 196,729 + Atu3186 0.85 -0.3 196,805 + -2.0 196,847 + -0.7 197,004 + Atu3187 0.16 +1.0 197,004 + Atu3187 0.16 +1.6 197,027 - Atu3187 0.19 +0.9 197,109 - Atu3187 0.28 +0.9 197,265 + Atu3187 0.47 -0.1 197,309 - Atu3187 0.52 +0.3 197,397 - Atu3187 0.62 -0.6 197,429 - Atu3187 0.66 -0.5 197,510 - Atu3187 0.76 +0.1 197,604 - Atu3187 0.87 -2.4 197,606 + Atu3187 0.87 -1.2 197,606 + Atu3187 0.87 +0.4 197,652 - +1.1 197,677 + -1.0 197,694 + -2.5 197,770 + -0.7 197,778 - -0.5 197,898 + Atu3188 0.17 -2.2 197,958 - Atu3188 0.23 -0.1 198,032 - Atu3188 0.30 +0.6 198,059 + Atu3188 0.32 -0.6 198,059 + Atu3188 0.32 +1.3 198,140 - Atu3188 0.40 -0.3 198,145 + Atu3188 0.40 -1.0 198,220 - Atu3188 0.47 -2.6 198,226 + Atu3188 0.48 -0.8 198,290 + Atu3188 0.54 -1.4 198,300 + Atu3188 0.55 -2.1 198,376 - Atu3188 0.62 -0.3 198,470 - Atu3188 0.71 -1.7 198,544 - Atu3188 0.78 +0.5 198,593 - Atu3188 0.83 -0.7 198,595 + Atu3188 0.83 -2.0 198,595 + Atu3188 0.83 -2.2 198,632 + Atu3188 0.86 +1.2 198,640 - Atu3188 0.87 -0.0 198,640 - Atu3188 0.87 +0.0 198,689 + -0.7 198,689 + -0.2 198,689 + -1.3 198,689 + -1.2 198,694 + -1.0 198,702 - -1.5
Or see this region's nucleotide sequence