Experiment: AgroPhage_C10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0452 and Atu0453 are separated by 264 nucleotides Atu0453 and Atu0454 overlap by 1 nucleotides Atu0454 and Atu8126 are separated by 208 nucleotides
Atu0452: Atu0452 - hypothetical protein, at 447,142 to 447,747
Atu0452
Atu0453: Atu0453 - hypothetical protein, at 448,012 to 448,758
Atu0453
Atu0454: Atu0454 - hypothetical protein, at 448,758 to 449,309
Atu0454
Atu8126: Atu8126 - putative phage tail protein I, at 449,518 to 450,183
Atu8126
Position (kb) 448
449 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 447.054 kb on - strand at 447.087 kb on + strand at 447.109 kb on + strand at 447.127 kb on - strand at 447.208 kb on - strand, within Atu0452 at 447.208 kb on - strand, within Atu0452 at 447.246 kb on - strand, within Atu0452 at 447.336 kb on - strand, within Atu0452 at 447.400 kb on - strand, within Atu0452 at 447.413 kb on + strand, within Atu0452 at 447.459 kb on + strand, within Atu0452 at 447.477 kb on + strand, within Atu0452 at 447.477 kb on + strand, within Atu0452 at 447.477 kb on + strand, within Atu0452 at 447.485 kb on - strand, within Atu0452 at 447.491 kb on - strand, within Atu0452 at 447.496 kb on - strand, within Atu0452 at 447.512 kb on + strand, within Atu0452 at 447.512 kb on + strand, within Atu0452 at 447.512 kb on + strand, within Atu0452 at 447.512 kb on + strand, within Atu0452 at 447.520 kb on - strand, within Atu0452 at 447.525 kb on - strand, within Atu0452 at 447.648 kb on - strand, within Atu0452 at 447.658 kb on + strand, within Atu0452 at 447.730 kb on - strand at 447.730 kb on - strand at 447.760 kb on + strand at 447.772 kb on + strand at 447.850 kb on + strand at 447.859 kb on + strand at 447.874 kb on - strand at 447.931 kb on + strand at 447.978 kb on - strand at 448.009 kb on + strand at 448.017 kb on - strand at 448.038 kb on + strand at 448.046 kb on - strand at 448.064 kb on - strand at 448.113 kb on + strand, within Atu0453 at 448.118 kb on - strand, within Atu0453 at 448.157 kb on - strand, within Atu0453 at 448.164 kb on - strand, within Atu0453 at 448.199 kb on + strand, within Atu0453 at 448.199 kb on + strand, within Atu0453 at 448.370 kb on - strand, within Atu0453 at 448.376 kb on - strand, within Atu0453 at 448.381 kb on + strand, within Atu0453 at 448.381 kb on - strand, within Atu0453 at 448.478 kb on - strand, within Atu0453 at 448.522 kb on - strand, within Atu0453 at 448.548 kb on + strand, within Atu0453 at 448.661 kb on - strand, within Atu0453 at 448.716 kb on + strand at 448.738 kb on + strand at 448.746 kb on - strand at 448.747 kb on + strand at 448.781 kb on - strand at 448.880 kb on - strand, within Atu0454 at 448.882 kb on + strand, within Atu0454 at 448.890 kb on - strand, within Atu0454 at 448.891 kb on + strand, within Atu0454 at 448.900 kb on - strand, within Atu0454 at 448.905 kb on + strand, within Atu0454 at 448.923 kb on - strand, within Atu0454 at 448.973 kb on + strand, within Atu0454 at 448.973 kb on + strand, within Atu0454 at 448.973 kb on + strand, within Atu0454 at 448.981 kb on - strand, within Atu0454 at 448.981 kb on - strand, within Atu0454 at 449.227 kb on + strand, within Atu0454 at 449.288 kb on - strand at 449.294 kb on - strand at 449.342 kb on - strand at 449.457 kb on + strand at 449.472 kb on - strand at 449.525 kb on + strand at 449.525 kb on + strand at 449.533 kb on - strand at 449.533 kb on - strand at 449.606 kb on - strand, within Atu8126 at 449.622 kb on - strand, within Atu8126 at 449.622 kb on - strand, within Atu8126 at 449.622 kb on - strand, within Atu8126
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C10 remove 447,054 - -0.0 447,087 + +0.0 447,109 + -3.5 447,127 - +0.7 447,208 - Atu0452 0.11 +1.4 447,208 - Atu0452 0.11 +1.3 447,246 - Atu0452 0.17 -0.5 447,336 - Atu0452 0.32 +3.2 447,400 - Atu0452 0.43 -0.2 447,413 + Atu0452 0.45 +0.8 447,459 + Atu0452 0.52 +0.9 447,477 + Atu0452 0.55 -0.5 447,477 + Atu0452 0.55 +1.1 447,477 + Atu0452 0.55 +0.6 447,485 - Atu0452 0.57 -0.2 447,491 - Atu0452 0.58 +0.2 447,496 - Atu0452 0.58 -0.3 447,512 + Atu0452 0.61 -1.1 447,512 + Atu0452 0.61 +0.7 447,512 + Atu0452 0.61 -0.0 447,512 + Atu0452 0.61 -0.4 447,520 - Atu0452 0.62 +0.5 447,525 - Atu0452 0.63 +0.5 447,648 - Atu0452 0.83 +0.5 447,658 + Atu0452 0.85 +1.8 447,730 - +0.7 447,730 - +1.4 447,760 + +0.9 447,772 + -1.2 447,850 + +0.7 447,859 + +1.1 447,874 - +2.4 447,931 + -0.2 447,978 - +0.8 448,009 + +0.3 448,017 - +0.1 448,038 + +0.9 448,046 - -3.0 448,064 - +0.9 448,113 + Atu0453 0.14 +0.8 448,118 - Atu0453 0.14 -0.0 448,157 - Atu0453 0.19 +1.9 448,164 - Atu0453 0.20 +0.5 448,199 + Atu0453 0.25 +0.4 448,199 + Atu0453 0.25 +1.2 448,370 - Atu0453 0.48 -0.2 448,376 - Atu0453 0.49 +0.3 448,381 + Atu0453 0.49 -0.2 448,381 - Atu0453 0.49 +0.9 448,478 - Atu0453 0.62 +0.4 448,522 - Atu0453 0.68 +0.1 448,548 + Atu0453 0.72 +0.4 448,661 - Atu0453 0.87 +2.2 448,716 + +1.5 448,738 + -0.3 448,746 - +0.3 448,747 + -0.4 448,781 - -0.8 448,880 - Atu0454 0.22 +0.4 448,882 + Atu0454 0.22 +0.7 448,890 - Atu0454 0.24 +1.2 448,891 + Atu0454 0.24 +0.3 448,900 - Atu0454 0.26 +0.9 448,905 + Atu0454 0.27 +0.3 448,923 - Atu0454 0.30 +0.2 448,973 + Atu0454 0.39 -0.2 448,973 + Atu0454 0.39 +0.6 448,973 + Atu0454 0.39 +0.1 448,981 - Atu0454 0.40 +1.5 448,981 - Atu0454 0.40 +1.2 449,227 + Atu0454 0.85 +0.6 449,288 - +0.5 449,294 - -0.4 449,342 - +1.0 449,457 + -0.0 449,472 - +2.4 449,525 + +0.5 449,525 + +0.3 449,533 - +0.5 449,533 - +2.0 449,606 - Atu8126 0.13 +1.3 449,622 - Atu8126 0.16 +1.4 449,622 - Atu8126 0.16 +3.0 449,622 - Atu8126 0.16 +1.6
Or see this region's nucleotide sequence