Experiment: AgroPhage_C10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0443 and Atu0444 are separated by 7 nucleotides Atu0444 and Atu0445 are separated by 209 nucleotides Atu0445 and Atu0446 are separated by 487 nucleotides
Atu0443: Atu0443 - putative phage repressor, at 438,416 to 439,111
Atu0443
Atu0444: Atu0444 - hypothetical protein, at 439,119 to 439,418
Atu0444
Atu0445: Atu0445 - hypothetical protein, at 439,628 to 440,125
Atu0445
Atu0446: Atu0446 - hypothetical protein, at 440,613 to 441,758
Atu0446
Position (kb) 439
440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 439.406 kb on - strand at 439.407 kb on + strand at 439.615 kb on - strand at 439.654 kb on + strand at 439.662 kb on - strand at 439.790 kb on + strand, within Atu0445 at 439.796 kb on - strand, within Atu0445 at 439.838 kb on - strand, within Atu0445 at 439.887 kb on + strand, within Atu0445 at 439.889 kb on + strand, within Atu0445 at 440.057 kb on + strand, within Atu0445 at 440.057 kb on + strand, within Atu0445 at 440.065 kb on - strand, within Atu0445 at 440.093 kb on - strand at 440.236 kb on + strand at 440.340 kb on + strand at 440.340 kb on + strand at 440.340 kb on + strand at 440.348 kb on - strand at 440.348 kb on - strand at 440.457 kb on - strand at 440.460 kb on - strand at 440.490 kb on - strand at 440.746 kb on + strand, within Atu0446 at 441.092 kb on + strand, within Atu0446
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C10 remove 439,406 - -1.4 439,407 + +1.2 439,615 - -0.7 439,654 + -0.1 439,662 - -1.8 439,790 + Atu0445 0.33 +1.3 439,796 - Atu0445 0.34 +1.4 439,838 - Atu0445 0.42 +0.9 439,887 + Atu0445 0.52 -1.0 439,889 + Atu0445 0.52 +1.2 440,057 + Atu0445 0.86 +0.3 440,057 + Atu0445 0.86 -0.9 440,065 - Atu0445 0.88 -3.0 440,093 - +0.2 440,236 + -0.0 440,340 + -0.0 440,340 + -0.1 440,340 + +0.0 440,348 - -1.3 440,348 - +0.3 440,457 - -0.6 440,460 - -2.4 440,490 - +0.2 440,746 + Atu0446 0.12 -1.4 441,092 + Atu0446 0.42 +0.0
Or see this region's nucleotide sequence