Strain Fitness in Agrobacterium fabrum C58 around Atu0325

Experiment: AgroPhage_C10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0324 and Atu0325 are separated by 69 nucleotidesAtu0325 and Atu0326 are separated by 5 nucleotidesAtu0326 and Atu0327 are separated by 17 nucleotides Atu0324: Atu0324 - chromosomal replication initiator protein DnaA, at 317,547 to 319,109 Atu0324 Atu0325: Atu0325 - oxygen-independent coproporphyrinogen III oxidase, at 319,179 to 320,378 Atu0325 Atu0326: Atu0326 - putative deoxyribonucleotide triphosphate pyrophosphatase, at 320,384 to 321,028 Atu0326 Atu0327: Atu0327 - ribonuclease PH, at 321,046 to 321,762 Atu0327 Position (kb) 319 320 321Strain fitness (log2 ratio) -2 -1 0 1at 319.170 kb on + strandat 319.178 kb on - strandat 319.183 kb on - strandat 320.584 kb on - strand, within Atu0326

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_C10
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319,170 + +0.1
319,178 - -0.3
319,183 - -1.8
320,584 - Atu0326 0.31 +1.7

Or see this region's nucleotide sequence