Experiment: AgroPhage_C10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0092 and Atu0093 are separated by 34 nucleotides Atu0093 and Atu0094 are separated by 58 nucleotides Atu0094 and Atu0095 are separated by 59 nucleotides Atu0095 and Atu0096 are separated by 24 nucleotides
Atu0092: Atu0092 - lytic murein transglycosylase, at 96,508 to 97,773
Atu0092
Atu0093: Atu0093 - Recombination protein, at 97,808 to 98,413
Atu0093
Atu0094: Atu0094 - hypothetical protein, at 98,472 to 99,086
Atu0094
Atu0095: Atu0095 - hypothetical protein, at 99,146 to 99,469
Atu0095
Atu0096: Atu0096 - DNA polymerase III, tau subunit, at 99,494 to 101,368
Atu0096
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 97.521 kb on + strand, within Atu0092 at 97.569 kb on - strand, within Atu0092 at 97.657 kb on - strand at 97.709 kb on - strand at 97.709 kb on - strand at 97.791 kb on + strand at 97.804 kb on + strand at 97.841 kb on + strand at 97.852 kb on + strand at 98.002 kb on + strand, within Atu0093 at 98.026 kb on + strand, within Atu0093 at 98.076 kb on + strand, within Atu0093 at 98.076 kb on + strand, within Atu0093 at 98.094 kb on - strand, within Atu0093 at 98.098 kb on - strand, within Atu0093 at 98.194 kb on - strand, within Atu0093 at 98.231 kb on + strand, within Atu0093 at 98.245 kb on - strand, within Atu0093 at 98.249 kb on + strand, within Atu0093 at 98.249 kb on + strand, within Atu0093 at 98.466 kb on - strand at 98.489 kb on + strand at 98.489 kb on + strand at 98.616 kb on + strand, within Atu0094 at 98.616 kb on + strand, within Atu0094 at 98.624 kb on - strand, within Atu0094 at 98.653 kb on + strand, within Atu0094 at 98.682 kb on + strand, within Atu0094 at 98.690 kb on - strand, within Atu0094 at 98.770 kb on + strand, within Atu0094 at 98.786 kb on - strand, within Atu0094 at 98.847 kb on - strand, within Atu0094 at 98.993 kb on - strand, within Atu0094 at 99.014 kb on + strand, within Atu0094 at 99.080 kb on + strand at 99.080 kb on + strand at 99.088 kb on - strand at 99.095 kb on - strand at 99.105 kb on - strand at 99.120 kb on + strand at 99.242 kb on + strand, within Atu0095 at 99.264 kb on + strand, within Atu0095 at 99.296 kb on - strand, within Atu0095 at 99.425 kb on - strand, within Atu0095 at 99.432 kb on + strand, within Atu0095 at 99.438 kb on + strand at 99.478 kb on + strand at 99.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C10 remove 97,521 + Atu0092 0.80 +1.2 97,569 - Atu0092 0.84 -1.3 97,657 - +1.2 97,709 - +1.1 97,709 - +1.9 97,791 + +0.2 97,804 + -0.9 97,841 + -0.2 97,852 + +0.9 98,002 + Atu0093 0.32 +0.4 98,026 + Atu0093 0.36 -0.9 98,076 + Atu0093 0.44 +1.1 98,076 + Atu0093 0.44 -2.1 98,094 - Atu0093 0.47 +1.2 98,098 - Atu0093 0.48 -0.3 98,194 - Atu0093 0.64 -2.3 98,231 + Atu0093 0.70 +1.2 98,245 - Atu0093 0.72 -1.8 98,249 + Atu0093 0.73 +0.0 98,249 + Atu0093 0.73 +0.1 98,466 - +0.7 98,489 + +0.3 98,489 + +0.1 98,616 + Atu0094 0.23 -0.6 98,616 + Atu0094 0.23 +0.7 98,624 - Atu0094 0.25 -0.1 98,653 + Atu0094 0.29 +0.5 98,682 + Atu0094 0.34 -0.1 98,690 - Atu0094 0.35 +0.5 98,770 + Atu0094 0.48 -3.7 98,786 - Atu0094 0.51 +2.0 98,847 - Atu0094 0.61 +2.1 98,993 - Atu0094 0.85 +0.1 99,014 + Atu0094 0.88 -0.5 99,080 + -0.1 99,080 + -0.6 99,088 - +0.3 99,095 - +1.5 99,105 - -0.2 99,120 + +1.6 99,242 + Atu0095 0.30 +0.3 99,264 + Atu0095 0.36 -0.7 99,296 - Atu0095 0.46 +0.8 99,425 - Atu0095 0.86 +0.3 99,432 + Atu0095 0.88 +1.4 99,438 + +0.3 99,478 + -0.4 99,578 - -0.1
Or see this region's nucleotide sequence