Strain Fitness in Agrobacterium fabrum C58 around Atu0052

Experiment: AgroPhage_C10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0051 and Atu0052 are separated by 29 nucleotidesAtu0052 and Atu0053 are separated by 667 nucleotides Atu0051: Atu0051 - two component sensor kinase, at 52,255 to 53,562 Atu0051 Atu0052: Atu0052 - helicase, at 53,592 to 56,078 Atu0052 Atu0053: Atu0053 - 16S ribosomal RNA, at 56,746 to 58,225 Atu0053 Position (kb) 53 54 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2 3at 52.653 kb on + strand, within Atu0051at 52.796 kb on + strand, within Atu0051at 52.913 kb on + strand, within Atu0051at 53.157 kb on + strand, within Atu0051at 53.227 kb on + strand, within Atu0051at 53.235 kb on - strand, within Atu0051at 53.272 kb on - strand, within Atu0051at 53.292 kb on + strand, within Atu0051at 53.300 kb on - strand, within Atu0051at 53.300 kb on - strand, within Atu0051at 53.377 kb on + strand, within Atu0051at 53.420 kb on + strand, within Atu0051at 53.505 kb on + strandat 53.505 kb on + strandat 53.505 kb on + strandat 53.513 kb on - strandat 53.513 kb on - strandat 53.513 kb on - strandat 53.571 kb on + strandat 53.572 kb on - strandat 53.579 kb on - strandat 53.579 kb on - strandat 53.579 kb on - strandat 53.606 kb on + strandat 53.614 kb on - strandat 53.693 kb on + strandat 53.738 kb on + strandat 53.738 kb on + strandat 53.738 kb on + strandat 53.746 kb on - strandat 53.750 kb on + strandat 53.760 kb on + strandat 53.760 kb on + strandat 53.875 kb on + strand, within Atu0052at 53.919 kb on - strand, within Atu0052at 53.930 kb on - strand, within Atu0052at 53.991 kb on + strand, within Atu0052at 53.991 kb on + strand, within Atu0052at 53.999 kb on - strand, within Atu0052at 54.001 kb on - strand, within Atu0052at 54.068 kb on + strand, within Atu0052at 54.130 kb on - strand, within Atu0052at 54.216 kb on + strand, within Atu0052at 54.216 kb on + strand, within Atu0052at 54.216 kb on + strand, within Atu0052at 54.224 kb on - strand, within Atu0052at 54.224 kb on - strand, within Atu0052at 54.341 kb on - strand, within Atu0052at 54.417 kb on - strand, within Atu0052at 54.445 kb on + strand, within Atu0052at 54.445 kb on + strand, within Atu0052at 54.453 kb on - strand, within Atu0052at 54.453 kb on - strand, within Atu0052at 54.455 kb on + strand, within Atu0052at 54.489 kb on + strand, within Atu0052at 54.509 kb on + strand, within Atu0052at 54.514 kb on + strand, within Atu0052at 54.542 kb on - strand, within Atu0052at 54.602 kb on + strand, within Atu0052at 54.602 kb on + strand, within Atu0052at 54.610 kb on - strand, within Atu0052at 54.696 kb on - strand, within Atu0052at 54.707 kb on - strand, within Atu0052at 54.848 kb on - strand, within Atu0052at 54.900 kb on - strand, within Atu0052at 54.900 kb on - strand, within Atu0052at 54.930 kb on + strand, within Atu0052at 55.006 kb on + strand, within Atu0052at 55.081 kb on + strand, within Atu0052at 55.089 kb on - strand, within Atu0052at 55.118 kb on + strand, within Atu0052at 55.125 kb on - strand, within Atu0052at 55.184 kb on - strand, within Atu0052at 55.259 kb on + strand, within Atu0052at 55.286 kb on - strand, within Atu0052at 55.373 kb on + strand, within Atu0052at 55.373 kb on - strand, within Atu0052at 55.381 kb on - strand, within Atu0052at 55.383 kb on - strand, within Atu0052at 55.417 kb on + strand, within Atu0052at 55.465 kb on + strand, within Atu0052at 55.515 kb on + strand, within Atu0052at 55.556 kb on + strand, within Atu0052at 55.598 kb on - strand, within Atu0052at 55.721 kb on - strand, within Atu0052at 55.751 kb on + strand, within Atu0052at 55.751 kb on + strand, within Atu0052at 55.840 kb on - strandat 55.894 kb on - strandat 55.939 kb on + strandat 55.945 kb on + strandat 55.945 kb on + strandat 55.947 kb on - strandat 55.953 kb on - strandat 55.993 kb on + strandat 56.001 kb on - strandat 56.006 kb on - strandat 56.013 kb on + strandat 56.028 kb on + strandat 56.104 kb on + strandat 56.137 kb on - strandat 56.147 kb on - strandat 56.147 kb on - strandat 56.203 kb on + strandat 56.211 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_C10
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52,653 + Atu0051 0.30 +2.3
52,796 + Atu0051 0.41 +2.5
52,913 + Atu0051 0.50 -1.1
53,157 + Atu0051 0.69 -1.5
53,227 + Atu0051 0.74 -1.4
53,235 - Atu0051 0.75 -1.0
53,272 - Atu0051 0.78 -0.2
53,292 + Atu0051 0.79 +0.4
53,300 - Atu0051 0.80 +3.0
53,300 - Atu0051 0.80 -0.9
53,377 + Atu0051 0.86 -0.2
53,420 + Atu0051 0.89 +2.5
53,505 + -0.4
53,505 + -0.5
53,505 + +0.2
53,513 - +0.4
53,513 - +0.2
53,513 - +1.2
53,571 + -1.0
53,572 - -0.3
53,579 - -0.9
53,579 - +0.9
53,579 - +3.2
53,606 + -0.5
53,614 - +0.2
53,693 + -1.8
53,738 + +0.3
53,738 + -0.1
53,738 + -1.0
53,746 - -2.5
53,750 + -0.9
53,760 + -1.4
53,760 + +1.1
53,875 + Atu0052 0.11 -0.4
53,919 - Atu0052 0.13 +1.0
53,930 - Atu0052 0.14 +0.8
53,991 + Atu0052 0.16 -2.1
53,991 + Atu0052 0.16 -1.5
53,999 - Atu0052 0.16 -1.6
54,001 - Atu0052 0.16 +0.5
54,068 + Atu0052 0.19 -0.3
54,130 - Atu0052 0.22 -0.3
54,216 + Atu0052 0.25 -0.0
54,216 + Atu0052 0.25 +1.2
54,216 + Atu0052 0.25 -0.2
54,224 - Atu0052 0.25 +0.4
54,224 - Atu0052 0.25 -1.0
54,341 - Atu0052 0.30 +0.7
54,417 - Atu0052 0.33 +1.4
54,445 + Atu0052 0.34 +1.1
54,445 + Atu0052 0.34 -0.3
54,453 - Atu0052 0.35 -0.6
54,453 - Atu0052 0.35 -2.3
54,455 + Atu0052 0.35 +1.0
54,489 + Atu0052 0.36 -1.1
54,509 + Atu0052 0.37 +1.2
54,514 + Atu0052 0.37 +0.0
54,542 - Atu0052 0.38 +0.2
54,602 + Atu0052 0.41 -1.7
54,602 + Atu0052 0.41 -0.6
54,610 - Atu0052 0.41 -1.1
54,696 - Atu0052 0.44 +0.8
54,707 - Atu0052 0.45 +1.2
54,848 - Atu0052 0.51 +0.1
54,900 - Atu0052 0.53 -0.2
54,900 - Atu0052 0.53 +0.8
54,930 + Atu0052 0.54 +0.0
55,006 + Atu0052 0.57 -0.9
55,081 + Atu0052 0.60 -0.6
55,089 - Atu0052 0.60 +2.7
55,118 + Atu0052 0.61 -0.5
55,125 - Atu0052 0.62 +0.7
55,184 - Atu0052 0.64 -2.4
55,259 + Atu0052 0.67 -0.1
55,286 - Atu0052 0.68 -0.4
55,373 + Atu0052 0.72 +0.4
55,373 - Atu0052 0.72 +0.5
55,381 - Atu0052 0.72 -0.0
55,383 - Atu0052 0.72 -0.4
55,417 + Atu0052 0.73 +1.2
55,465 + Atu0052 0.75 +0.1
55,515 + Atu0052 0.77 +0.6
55,556 + Atu0052 0.79 +1.8
55,598 - Atu0052 0.81 -0.1
55,721 - Atu0052 0.86 +1.5
55,751 + Atu0052 0.87 -0.7
55,751 + Atu0052 0.87 -0.5
55,840 - +0.2
55,894 - +0.6
55,939 + +1.4
55,945 + +0.0
55,945 + +0.1
55,947 - -0.9
55,953 - -0.1
55,993 + +0.2
56,001 - -1.0
56,006 - +0.6
56,013 + +0.7
56,028 + -0.2
56,104 + -1.4
56,137 - +0.6
56,147 - +0.1
56,147 - -0.6
56,203 + -0.2
56,211 - -0.3

Or see this region's nucleotide sequence