Experiment: AgroPhage_C04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3309 and Atu8187 are separated by 94 nucleotides Atu8187 and Atu3311 are separated by 433 nucleotides
Atu3309: Atu3309 - cellulose synthase, at 338,251 to 340,440
Atu3309
Atu8187: Atu8187 - hypothetical protein, at 340,535 to 341,434
Atu8187
Atu3311: Atu3311 - phosphomannose isomerase, at 341,868 to 343,052
Atu3311
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 339.561 kb on + strand, within Atu3309 at 339.561 kb on + strand, within Atu3309 at 339.569 kb on - strand, within Atu3309 at 339.608 kb on - strand, within Atu3309 at 339.638 kb on - strand, within Atu3309 at 339.956 kb on + strand, within Atu3309 at 339.979 kb on - strand, within Atu3309 at 340.022 kb on - strand, within Atu3309 at 340.053 kb on - strand, within Atu3309 at 340.137 kb on + strand, within Atu3309 at 340.160 kb on + strand, within Atu3309 at 340.235 kb on + strand at 340.243 kb on - strand at 340.243 kb on - strand at 340.306 kb on + strand at 340.331 kb on - strand at 340.331 kb on - strand at 340.538 kb on + strand at 340.630 kb on + strand, within Atu8187 at 340.637 kb on + strand, within Atu8187 at 340.708 kb on - strand, within Atu8187 at 340.743 kb on + strand, within Atu8187 at 340.743 kb on + strand, within Atu8187 at 340.743 kb on + strand, within Atu8187 at 340.851 kb on + strand, within Atu8187 at 340.859 kb on - strand, within Atu8187 at 340.905 kb on + strand, within Atu8187 at 340.920 kb on - strand, within Atu8187 at 341.302 kb on + strand, within Atu8187 at 341.532 kb on + strand at 341.559 kb on - strand at 341.731 kb on + strand at 341.739 kb on - strand at 341.739 kb on - strand at 341.920 kb on - strand at 341.946 kb on + strand at 341.978 kb on - strand at 342.071 kb on - strand, within Atu3311 at 342.076 kb on - strand, within Atu3311 at 342.138 kb on - strand, within Atu3311 at 342.148 kb on - strand, within Atu3311 at 342.148 kb on - strand, within Atu3311 at 342.364 kb on - strand, within Atu3311 at 342.403 kb on + strand, within Atu3311
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C04 remove 339,561 + Atu3309 0.60 -0.7 339,561 + Atu3309 0.60 +0.4 339,569 - Atu3309 0.60 -1.3 339,608 - Atu3309 0.62 -1.7 339,638 - Atu3309 0.63 -0.0 339,956 + Atu3309 0.78 -0.8 339,979 - Atu3309 0.79 -1.2 340,022 - Atu3309 0.81 -0.2 340,053 - Atu3309 0.82 +0.1 340,137 + Atu3309 0.86 -0.6 340,160 + Atu3309 0.87 -1.8 340,235 + -0.0 340,243 - +0.9 340,243 - -0.9 340,306 + -2.3 340,331 - +2.3 340,331 - -0.3 340,538 + -1.6 340,630 + Atu8187 0.11 -0.5 340,637 + Atu8187 0.11 -1.9 340,708 - Atu8187 0.19 +0.2 340,743 + Atu8187 0.23 -1.1 340,743 + Atu8187 0.23 -0.9 340,743 + Atu8187 0.23 +0.1 340,851 + Atu8187 0.35 +0.0 340,859 - Atu8187 0.36 +0.3 340,905 + Atu8187 0.41 +1.0 340,920 - Atu8187 0.43 +1.0 341,302 + Atu8187 0.85 -0.3 341,532 + -1.6 341,559 - +2.0 341,731 + -0.7 341,739 - -0.5 341,739 - -1.6 341,920 - -2.1 341,946 + +7.6 341,978 - +6.7 342,071 - Atu3311 0.17 +7.6 342,076 - Atu3311 0.18 +7.7 342,138 - Atu3311 0.23 +7.6 342,148 - Atu3311 0.24 +7.4 342,148 - Atu3311 0.24 +7.4 342,364 - Atu3311 0.42 +7.2 342,403 + Atu3311 0.45 +8.4
Or see this region's nucleotide sequence