Experiment: AgroPhage_C04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5188 and Atu5189 overlap by 4 nucleotides Atu5189 and Atu5190 are separated by 114 nucleotides Atu5190 and Atu5191 are separated by 160 nucleotides
Atu5188: Atu5188 - zinc-binding dehydrogenase, at 184,097 to 185,083
Atu5188
Atu5189: Atu5189 - hypothetical protein, at 185,080 to 185,412
Atu5189
Atu5190: Atu5190 - hypothetical protein, at 185,527 to 186,249
Atu5190
Atu5191: Atu5191 - hypothetical protein, at 186,410 to 187,534
Atu5191
Position (kb) 185
186
187 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 184.568 kb on - strand, within Atu5188 at 184.599 kb on + strand, within Atu5188 at 184.606 kb on + strand, within Atu5188 at 184.607 kb on - strand, within Atu5188 at 184.607 kb on - strand, within Atu5188 at 184.736 kb on - strand, within Atu5188 at 184.764 kb on + strand, within Atu5188 at 184.784 kb on - strand, within Atu5188 at 184.784 kb on - strand, within Atu5188 at 184.897 kb on - strand, within Atu5188 at 184.897 kb on - strand, within Atu5188 at 185.000 kb on - strand at 185.064 kb on + strand at 185.093 kb on + strand at 185.130 kb on + strand, within Atu5189 at 185.161 kb on - strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.163 kb on + strand, within Atu5189 at 185.169 kb on - strand, within Atu5189 at 185.171 kb on - strand, within Atu5189 at 185.178 kb on + strand, within Atu5189 at 185.221 kb on + strand, within Atu5189 at 185.235 kb on + strand, within Atu5189 at 185.243 kb on - strand, within Atu5189 at 185.291 kb on + strand, within Atu5189 at 185.314 kb on + strand, within Atu5189 at 185.415 kb on - strand at 185.415 kb on - strand at 185.461 kb on + strand at 185.531 kb on + strand at 185.536 kb on + strand at 185.539 kb on - strand at 185.544 kb on - strand at 185.579 kb on - strand at 185.660 kb on + strand, within Atu5190 at 185.728 kb on - strand, within Atu5190 at 185.751 kb on + strand, within Atu5190 at 185.765 kb on + strand, within Atu5190 at 185.841 kb on + strand, within Atu5190 at 185.864 kb on - strand, within Atu5190 at 185.875 kb on - strand, within Atu5190 at 185.888 kb on + strand, within Atu5190 at 186.020 kb on - strand, within Atu5190 at 186.057 kb on + strand, within Atu5190 at 186.060 kb on - strand, within Atu5190 at 186.060 kb on - strand, within Atu5190 at 186.161 kb on + strand, within Atu5190 at 186.161 kb on + strand, within Atu5190 at 186.169 kb on - strand, within Atu5190 at 186.169 kb on - strand, within Atu5190 at 186.223 kb on + strand at 186.223 kb on + strand at 186.231 kb on - strand at 186.288 kb on + strand at 186.288 kb on + strand at 186.315 kb on - strand at 186.526 kb on - strand, within Atu5191 at 186.526 kb on - strand, within Atu5191 at 186.545 kb on + strand, within Atu5191 at 186.632 kb on - strand, within Atu5191 at 186.689 kb on + strand, within Atu5191 at 186.696 kb on - strand, within Atu5191 at 186.748 kb on + strand, within Atu5191 at 186.788 kb on + strand, within Atu5191 at 186.832 kb on - strand, within Atu5191 at 186.834 kb on - strand, within Atu5191 at 186.875 kb on - strand, within Atu5191 at 186.974 kb on + strand, within Atu5191 at 186.995 kb on + strand, within Atu5191 at 187.096 kb on - strand, within Atu5191 at 187.098 kb on - strand, within Atu5191 at 187.164 kb on + strand, within Atu5191 at 187.164 kb on + strand, within Atu5191 at 187.164 kb on + strand, within Atu5191 at 187.164 kb on - strand, within Atu5191 at 187.174 kb on - strand, within Atu5191 at 187.181 kb on + strand, within Atu5191
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C04 remove 184,568 - Atu5188 0.48 +1.1 184,599 + Atu5188 0.51 +0.4 184,606 + Atu5188 0.52 +0.3 184,607 - Atu5188 0.52 -2.2 184,607 - Atu5188 0.52 +0.4 184,736 - Atu5188 0.65 -0.1 184,764 + Atu5188 0.68 +0.2 184,784 - Atu5188 0.70 -0.7 184,784 - Atu5188 0.70 -0.0 184,897 - Atu5188 0.81 -3.1 184,897 - Atu5188 0.81 -1.4 185,000 - -0.6 185,064 + -3.1 185,093 + -0.3 185,130 + Atu5189 0.15 +0.5 185,161 - Atu5189 0.24 +0.6 185,163 + Atu5189 0.25 -0.3 185,163 + Atu5189 0.25 -3.9 185,163 + Atu5189 0.25 -3.1 185,163 + Atu5189 0.25 -2.9 185,163 + Atu5189 0.25 +0.3 185,169 - Atu5189 0.27 -0.3 185,171 - Atu5189 0.27 -1.6 185,178 + Atu5189 0.29 +0.5 185,221 + Atu5189 0.42 -0.1 185,235 + Atu5189 0.47 -0.9 185,243 - Atu5189 0.49 +1.8 185,291 + Atu5189 0.63 -0.5 185,314 + Atu5189 0.70 +0.4 185,415 - -0.6 185,415 - +0.0 185,461 + +0.2 185,531 + -0.6 185,536 + +0.9 185,539 - -0.1 185,544 - +0.0 185,579 - +0.6 185,660 + Atu5190 0.18 +1.2 185,728 - Atu5190 0.28 +0.1 185,751 + Atu5190 0.31 +1.1 185,765 + Atu5190 0.33 +0.1 185,841 + Atu5190 0.43 -0.4 185,864 - Atu5190 0.47 +0.3 185,875 - Atu5190 0.48 -0.1 185,888 + Atu5190 0.50 +1.6 186,020 - Atu5190 0.68 +2.3 186,057 + Atu5190 0.73 -0.5 186,060 - Atu5190 0.74 +1.5 186,060 - Atu5190 0.74 -0.7 186,161 + Atu5190 0.88 +0.2 186,161 + Atu5190 0.88 -1.0 186,169 - Atu5190 0.89 +0.6 186,169 - Atu5190 0.89 +0.0 186,223 + -0.7 186,223 + +1.4 186,231 - -0.4 186,288 + -0.3 186,288 + -1.0 186,315 - +0.9 186,526 - Atu5191 0.10 +0.1 186,526 - Atu5191 0.10 -2.1 186,545 + Atu5191 0.12 -2.5 186,632 - Atu5191 0.20 -1.3 186,689 + Atu5191 0.25 -1.0 186,696 - Atu5191 0.25 -2.4 186,748 + Atu5191 0.30 +0.2 186,788 + Atu5191 0.34 +0.4 186,832 - Atu5191 0.38 -0.7 186,834 - Atu5191 0.38 -0.2 186,875 - Atu5191 0.41 +1.2 186,974 + Atu5191 0.50 -1.0 186,995 + Atu5191 0.52 -0.4 187,096 - Atu5191 0.61 -0.5 187,098 - Atu5191 0.61 -0.5 187,164 + Atu5191 0.67 -2.0 187,164 + Atu5191 0.67 +1.1 187,164 + Atu5191 0.67 -0.6 187,164 - Atu5191 0.67 +0.3 187,174 - Atu5191 0.68 +0.1 187,181 + Atu5191 0.69 -2.0
Or see this region's nucleotide sequence