Strain Fitness in Agrobacterium fabrum C58 around Atu4412

Experiment: AgroPhage_C04

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	AgroPhage_C04
1,546,367	+		Atu4411	0.38	-1.2
1,546,397	-		Atu4411	0.41	-2.1
1,546,410	+		Atu4411	0.43	-3.2
1,546,480	+		Atu4411	0.51	+0.7
1,546,493	-		Atu4411	0.53	-0.6
1,546,507	+		Atu4411	0.54	-0.9
1,546,599	+		Atu4411	0.65	-0.3
1,546,816	-				+1.5
1,546,880	+				-3.9
1,546,881	-				-0.2
1,546,985	-				+0.2
1,547,007	-				-0.4
1,547,007	-				-0.3
1,547,146	+				-0.5
1,547,218	-				-0.5
1,547,276	+				+0.6
1,547,471	+				-1.0
1,547,568	-				-1.3
1,547,568	-				+0.5
1,547,598	-				+2.0
1,547,684	+				-1.0
1,547,761	-				-0.5
1,547,761	-				+0.1
1,547,761	-				+0.4
1,547,840	+				+1.2
1,547,871	-		Atu4412	0.10	+0.0
1,548,020	+		Atu4412	0.13	-0.0
1,548,028	-		Atu4412	0.13	-0.4
1,548,028	-		Atu4412	0.13	-0.2
1,548,028	-		Atu4412	0.13	-1.7
1,548,028	-		Atu4412	0.13	+0.1
1,548,192	-		Atu4412	0.16	-2.3
1,548,193	-		Atu4412	0.16	-0.6
1,548,212	+		Atu4412	0.16	+0.0
1,548,225	-		Atu4412	0.16	+1.8
1,548,225	-		Atu4412	0.16	-0.3
1,548,225	-		Atu4412	0.16	-0.5
1,548,310	-		Atu4412	0.18	+0.7
1,548,324	+		Atu4412	0.18	+1.3
1,548,337	-		Atu4412	0.18	-0.6
1,548,376	+		Atu4412	0.19	+0.2
1,548,410	-		Atu4412	0.20	-1.4
1,548,434	+		Atu4412	0.20	+0.2
1,548,567	+		Atu4412	0.22	-4.0
1,548,567	+		Atu4412	0.22	-0.4
1,548,656	-		Atu4412	0.24	+0.6
1,548,662	+		Atu4412	0.24	-1.1
1,548,725	+		Atu4412	0.25	+1.2
1,548,733	-		Atu4412	0.25	-0.3
1,548,733	-		Atu4412	0.25	+0.2
1,548,784	+		Atu4412	0.26	-0.7
1,548,786	+		Atu4412	0.26	+0.5
1,548,791	+		Atu4412	0.26	+0.9
1,548,794	-		Atu4412	0.26	+1.2
1,548,794	-		Atu4412	0.26	+0.5
1,548,909	+		Atu4412	0.28	-2.1
1,548,917	-		Atu4412	0.28	-0.6
1,548,917	-		Atu4412	0.28	-1.9
1,548,917	-		Atu4412	0.28	-0.8
1,548,917	-		Atu4412	0.28	-0.3
1,548,917	-		Atu4412	0.28	+0.9
1,548,922	-		Atu4412	0.28	-0.4
1,548,998	-		Atu4412	0.30	-0.5
1,548,998	-		Atu4412	0.30	-1.3
1,549,131	-		Atu4412	0.32	-0.1
1,549,142	+		Atu4412	0.32	+0.4
1,549,404	+		Atu4412	0.37	-1.1
1,549,409	+		Atu4412	0.37	+0.6
1,549,412	-		Atu4412	0.37	-0.5
1,549,412	-		Atu4412	0.37	-1.7
1,549,434	-		Atu4412	0.37	-2.0
1,549,460	+		Atu4412	0.38	+2.4
1,549,507	+		Atu4412	0.38	-0.7
1,549,619	-		Atu4412	0.40	+2.0
1,549,619	-		Atu4412	0.40	-0.1
1,549,645	+		Atu4412	0.41	-0.9
1,549,669	+		Atu4412	0.41	+1.0
1,549,852	-		Atu4412	0.44	-0.4
1,549,855	-		Atu4412	0.44	-1.1
1,549,856	+		Atu4412	0.44	+0.2
1,549,968	+		Atu4412	0.46	+1.9
1,549,968	+		Atu4412	0.46	+2.0
1,550,025	-		Atu4412	0.47	-2.2
1,550,086	+		Atu4412	0.48	+0.8
1,550,132	+		Atu4412	0.49	+0.4
1,550,171	+		Atu4412	0.50	-1.4
1,550,206	-		Atu4412	0.50	-0.4
1,550,319	+		Atu4412	0.52	-0.5
1,550,362	-		Atu4412	0.53	-0.4
1,550,384	-		Atu4412	0.54	-0.7
1,550,389	+		Atu4412	0.54	-0.7
1,550,389	+		Atu4412	0.54	-1.7
1,550,397	-		Atu4412	0.54	+0.0
1,550,397	-		Atu4412	0.54	+0.9
1,550,397	-		Atu4412	0.54	-1.8
1,550,416	-		Atu4412	0.54	-2.4
1,550,544	-		Atu4412	0.56	-1.2
1,550,592	+		Atu4412	0.57	-0.5
1,550,592	+		Atu4412	0.57	-0.3
1,550,592	+		Atu4412	0.57	+0.3
1,550,592	-		Atu4412	0.57	+0.1
1,550,600	-		Atu4412	0.57	-0.3
1,550,600	-		Atu4412	0.57	-1.8
1,550,600	-		Atu4412	0.57	-0.8
1,550,602	+		Atu4412	0.57	-1.6
1,550,610	-		Atu4412	0.57	+0.1
1,550,610	-		Atu4412	0.57	+0.1
1,550,610	-		Atu4412	0.57	-0.2
1,550,618	+		Atu4412	0.58	+0.0
1,550,623	+		Atu4412	0.58	-2.0
1,550,623	+		Atu4412	0.58	+1.3
1,550,623	+		Atu4412	0.58	-0.3
1,550,702	-		Atu4412	0.59	-1.7
1,550,740	+		Atu4412	0.60	-0.5
1,550,838	-		Atu4412	0.61	+3.0
1,550,858	+		Atu4412	0.62	-0.3
1,550,859	+		Atu4412	0.62	+0.3
1,550,867	-		Atu4412	0.62	+0.8
1,550,879	-		Atu4412	0.62	+0.3
1,550,893	+		Atu4412	0.62	+0.6
1,550,996	-		Atu4412	0.64	+0.1
1,551,122	-		Atu4412	0.66	+2.3
1,551,142	-		Atu4412	0.67	-0.0
1,551,190	+		Atu4412	0.67	-0.8
1,551,347	-		Atu4412	0.70	-0.1
1,551,380	-		Atu4412	0.71	-0.4
1,551,460	+		Atu4412	0.72	-0.8
1,551,561	-		Atu4412	0.74	+0.1
1,551,721	-		Atu4412	0.77	+1.5
1,551,911	+		Atu4412	0.80	-0.8
1,552,010	-		Atu4412	0.81	+0.2
1,552,037	+		Atu4412	0.82	+1.2
1,552,233	-		Atu4412	0.85	+0.1
1,552,278	+		Atu4412	0.86	+0.4
1,552,293	+		Atu4412	0.86	+2.2
1,552,351	-		Atu4412	0.87	+0.9
1,552,413	-		Atu4412	0.88	-0.8
1,552,438	+		Atu4412	0.89	-3.2
1,552,438	+		Atu4412	0.89	-1.7
1,552,438	+		Atu4412	0.89	-3.2
1,552,438	+		Atu4412	0.89	+3.8
1,552,438	+		Atu4412	0.89	-0.2
1,552,438	+		Atu4412	0.89	+1.4
1,552,438	+		Atu4412	0.89	+0.8
1,552,438	+		Atu4412	0.89	-2.9
1,552,438	+		Atu4412	0.89	-1.8
1,552,440	+		Atu4412	0.89	+0.3
1,552,440	+		Atu4412	0.89	-0.2
1,552,446	-		Atu4412	0.89	-0.4
1,552,446	-		Atu4412	0.89	-3.1
1,552,446	-		Atu4412	0.89	-2.7
1,552,446	-		Atu4412	0.89	+1.6
1,552,446	-		Atu4412	0.89	+0.8
1,552,446	-		Atu4412	0.89	-1.1
1,552,448	-		Atu4412	0.89	-2.4
1,552,448	-		Atu4412	0.89	+1.3
1,552,448	-		Atu4412	0.89	-1.1
1,552,768	-				-1.2
1,552,783	-				-2.4
1,552,852	-				+4.0
1,552,972	-				-0.2
1,553,024	+				-1.6
1,553,032	-				+1.5
1,553,049	-				-0.8
1,553,054	-				-2.6
1,553,095	-				-1.2
1,553,104	-				-0.5
1,553,137	+				-0.5
1,553,145	-				+0.2
1,553,159	-				-2.2
1,553,162	+				-2.2
1,553,263	+				-3.0
1,553,263	+				-1.6
1,553,278	+				+0.8
1,553,278	+				-1.1
1,553,278	+				-2.3
1,553,286	-				-0.3
1,553,286	-				-0.0
1,553,286	-				+1.1
1,553,291	-				+0.2
1,553,346	-				-3.6
1,553,484	-		Atu4413	0.16	-2.2
1,553,496	+		Atu4413	0.17	+0.3
1,553,526	-		Atu4413	0.19	-1.4
1,553,553	-		Atu4413	0.20	-0.3
1,553,726	+		Atu4413	0.30	+0.1
1,553,745	-		Atu4413	0.31	-0.9
1,553,954	-		Atu4413	0.43	-0.5
1,553,992	-		Atu4413	0.45	+2.3