Experiment: AgroPhage_C04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3406 and Atu3407 are separated by 14 nucleotides Atu3407 and Atu3408 are separated by 124 nucleotides
Atu3406: Atu3406 - hypothetical protein, at 451,499 to 452,335
Atu3406
Atu3407: Atu3407 - hypothetical protein, at 452,350 to 453,723
Atu3407
Atu3408: Atu3408 - 2-haloalkanoic acid dehalogenase, at 453,848 to 454,693
Atu3408
Position (kb) 452
453
454 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 451.424 kb on - strand at 451.510 kb on + strand at 451.577 kb on + strand at 451.604 kb on + strand, within Atu3406 at 451.609 kb on + strand, within Atu3406 at 451.627 kb on + strand, within Atu3406 at 451.698 kb on - strand, within Atu3406 at 451.829 kb on - strand, within Atu3406 at 451.888 kb on + strand, within Atu3406 at 451.911 kb on + strand, within Atu3406 at 451.961 kb on + strand, within Atu3406 at 451.969 kb on - strand, within Atu3406 at 451.979 kb on + strand, within Atu3406 at 452.000 kb on - strand, within Atu3406 at 452.073 kb on + strand, within Atu3406 at 452.160 kb on - strand, within Atu3406 at 452.202 kb on + strand, within Atu3406 at 452.309 kb on + strand at 452.327 kb on - strand at 452.348 kb on - strand at 452.371 kb on + strand at 452.371 kb on + strand at 452.391 kb on + strand at 452.409 kb on - strand at 452.483 kb on + strand at 452.536 kb on + strand, within Atu3407 at 452.709 kb on + strand, within Atu3407 at 452.717 kb on - strand, within Atu3407 at 452.790 kb on + strand, within Atu3407 at 452.798 kb on - strand, within Atu3407 at 452.859 kb on - strand, within Atu3407 at 452.859 kb on - strand, within Atu3407 at 452.863 kb on + strand, within Atu3407 at 452.970 kb on + strand, within Atu3407 at 452.972 kb on - strand, within Atu3407 at 453.060 kb on + strand, within Atu3407 at 453.068 kb on - strand, within Atu3407 at 453.068 kb on - strand, within Atu3407 at 453.089 kb on - strand, within Atu3407 at 453.148 kb on + strand, within Atu3407 at 453.148 kb on + strand, within Atu3407 at 453.156 kb on - strand, within Atu3407 at 453.156 kb on - strand, within Atu3407 at 453.245 kb on - strand, within Atu3407 at 453.261 kb on - strand, within Atu3407 at 453.309 kb on - strand, within Atu3407 at 453.341 kb on + strand, within Atu3407 at 453.424 kb on - strand, within Atu3407 at 453.572 kb on + strand, within Atu3407 at 453.616 kb on + strand at 453.624 kb on + strand at 453.669 kb on + strand at 453.674 kb on - strand at 453.693 kb on + strand at 453.696 kb on - strand at 453.712 kb on + strand at 453.712 kb on + strand at 453.712 kb on + strand at 453.712 kb on + strand at 453.772 kb on + strand at 454.032 kb on - strand, within Atu3408 at 454.061 kb on - strand, within Atu3408 at 454.073 kb on - strand, within Atu3408 at 454.075 kb on + strand, within Atu3408 at 454.093 kb on - strand, within Atu3408 at 454.126 kb on + strand, within Atu3408 at 454.134 kb on - strand, within Atu3408 at 454.182 kb on + strand, within Atu3408 at 454.187 kb on + strand, within Atu3408 at 454.306 kb on + strand, within Atu3408 at 454.314 kb on + strand, within Atu3408 at 454.336 kb on - strand, within Atu3408 at 454.489 kb on - strand, within Atu3408 at 454.546 kb on + strand, within Atu3408 at 454.591 kb on - strand, within Atu3408 at 454.600 kb on - strand, within Atu3408
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C04 remove 451,424 - +1.5 451,510 + +0.0 451,577 + -1.5 451,604 + Atu3406 0.13 +0.5 451,609 + Atu3406 0.13 -0.6 451,627 + Atu3406 0.15 +0.2 451,698 - Atu3406 0.24 -0.7 451,829 - Atu3406 0.39 -2.3 451,888 + Atu3406 0.46 +0.3 451,911 + Atu3406 0.49 +0.5 451,961 + Atu3406 0.55 -0.4 451,969 - Atu3406 0.56 -1.3 451,979 + Atu3406 0.57 -1.7 452,000 - Atu3406 0.60 +1.3 452,073 + Atu3406 0.69 -0.6 452,160 - Atu3406 0.79 -1.2 452,202 + Atu3406 0.84 +0.4 452,309 + +0.6 452,327 - -1.2 452,348 - +0.9 452,371 + +1.1 452,371 + +1.0 452,391 + -1.8 452,409 - +0.8 452,483 + -1.3 452,536 + Atu3407 0.14 -1.6 452,709 + Atu3407 0.26 +1.7 452,717 - Atu3407 0.27 -1.5 452,790 + Atu3407 0.32 +1.5 452,798 - Atu3407 0.33 +0.8 452,859 - Atu3407 0.37 -1.8 452,859 - Atu3407 0.37 +0.5 452,863 + Atu3407 0.37 +0.5 452,970 + Atu3407 0.45 -0.2 452,972 - Atu3407 0.45 -0.5 453,060 + Atu3407 0.52 -2.0 453,068 - Atu3407 0.52 -1.0 453,068 - Atu3407 0.52 -1.8 453,089 - Atu3407 0.54 -1.3 453,148 + Atu3407 0.58 -0.9 453,148 + Atu3407 0.58 +0.4 453,156 - Atu3407 0.59 -0.2 453,156 - Atu3407 0.59 +0.5 453,245 - Atu3407 0.65 -0.2 453,261 - Atu3407 0.66 +0.1 453,309 - Atu3407 0.70 -1.7 453,341 + Atu3407 0.72 +0.0 453,424 - Atu3407 0.78 +2.8 453,572 + Atu3407 0.89 +0.4 453,616 + -0.6 453,624 + -1.0 453,669 + +1.1 453,674 - +0.7 453,693 + +0.6 453,696 - +0.3 453,712 + +0.5 453,712 + -2.2 453,712 + +0.4 453,712 + -2.2 453,772 + -0.5 454,032 - Atu3408 0.22 +1.1 454,061 - Atu3408 0.25 +2.0 454,073 - Atu3408 0.27 -0.5 454,075 + Atu3408 0.27 +1.0 454,093 - Atu3408 0.29 -2.5 454,126 + Atu3408 0.33 -1.1 454,134 - Atu3408 0.34 +0.9 454,182 + Atu3408 0.39 +1.0 454,187 + Atu3408 0.40 -0.1 454,306 + Atu3408 0.54 +0.8 454,314 + Atu3408 0.55 -0.4 454,336 - Atu3408 0.58 -1.3 454,489 - Atu3408 0.76 +0.4 454,546 + Atu3408 0.83 -1.1 454,591 - Atu3408 0.88 -0.0 454,600 - Atu3408 0.89 +1.0
Or see this region's nucleotide sequence