Experiment: AgroPhage_C04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3359 and Atu3360 are separated by 12 nucleotides Atu3360 and Atu3361 are separated by 4 nucleotides Atu3361 and Atu3362 are separated by 26 nucleotides
Atu3359: Atu3359 - amino acid ABC transporter permease, at 397,043 to 397,825
Atu3359
Atu3360: Atu3360 - amino acid ABC transporter ATPase/permease, at 397,838 to 398,653
Atu3360
Atu3361: Atu3361 - hypothetical protein, at 398,658 to 400,004
Atu3361
Atu3362: Atu3362 - monooxygenase, at 400,031 to 401,341
Atu3362
Position (kb) 398
399
400
401 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 397.754 kb on + strand at 397.824 kb on + strand at 397.832 kb on - strand at 397.848 kb on - strand at 397.848 kb on - strand at 397.848 kb on - strand at 397.861 kb on - strand at 397.900 kb on + strand at 397.933 kb on + strand, within Atu3360 at 397.944 kb on - strand, within Atu3360 at 398.015 kb on + strand, within Atu3360 at 398.023 kb on - strand, within Atu3360 at 398.067 kb on - strand, within Atu3360 at 398.079 kb on + strand, within Atu3360 at 398.087 kb on - strand, within Atu3360 at 398.270 kb on - strand, within Atu3360 at 398.330 kb on + strand, within Atu3360 at 398.338 kb on - strand, within Atu3360 at 398.369 kb on - strand, within Atu3360 at 398.515 kb on - strand, within Atu3360 at 398.540 kb on + strand, within Atu3360 at 398.553 kb on - strand, within Atu3360 at 398.948 kb on - strand, within Atu3361 at 398.948 kb on - strand, within Atu3361 at 398.948 kb on - strand, within Atu3361 at 398.948 kb on - strand, within Atu3361 at 398.960 kb on + strand, within Atu3361 at 398.987 kb on + strand, within Atu3361 at 399.005 kb on - strand, within Atu3361 at 399.029 kb on - strand, within Atu3361 at 399.096 kb on - strand, within Atu3361 at 399.155 kb on - strand, within Atu3361 at 399.167 kb on + strand, within Atu3361 at 399.268 kb on + strand, within Atu3361 at 399.268 kb on + strand, within Atu3361 at 399.281 kb on - strand, within Atu3361 at 399.395 kb on + strand, within Atu3361 at 399.426 kb on + strand, within Atu3361 at 399.496 kb on - strand, within Atu3361 at 399.596 kb on - strand, within Atu3361 at 399.702 kb on + strand, within Atu3361 at 399.720 kb on - strand, within Atu3361 at 399.778 kb on + strand, within Atu3361 at 399.783 kb on + strand, within Atu3361 at 399.786 kb on - strand, within Atu3361 at 399.938 kb on + strand at 399.946 kb on - strand at 399.972 kb on - strand at 400.014 kb on + strand at 400.035 kb on - strand at 400.091 kb on - strand at 400.158 kb on - strand at 400.345 kb on + strand, within Atu3362 at 400.353 kb on - strand, within Atu3362 at 400.408 kb on - strand, within Atu3362 at 400.408 kb on - strand, within Atu3362 at 400.453 kb on + strand, within Atu3362 at 400.575 kb on - strand, within Atu3362 at 400.589 kb on + strand, within Atu3362 at 400.618 kb on - strand, within Atu3362 at 400.644 kb on - strand, within Atu3362 at 400.663 kb on - strand, within Atu3362 at 400.700 kb on + strand, within Atu3362 at 400.700 kb on + strand, within Atu3362 at 400.763 kb on + strand, within Atu3362 at 400.782 kb on + strand, within Atu3362 at 400.782 kb on - strand, within Atu3362 at 400.944 kb on - strand, within Atu3362 at 400.952 kb on + strand, within Atu3362 at 400.967 kb on - strand, within Atu3362 at 400.990 kb on + strand, within Atu3362 at 401.004 kb on + strand, within Atu3362
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C04 remove 397,754 + +1.9 397,824 + -1.2 397,832 - +0.1 397,848 - +0.7 397,848 - -0.4 397,848 - +1.4 397,861 - -0.4 397,900 + +0.3 397,933 + Atu3360 0.12 +1.9 397,944 - Atu3360 0.13 -1.4 398,015 + Atu3360 0.22 -2.3 398,023 - Atu3360 0.23 -0.4 398,067 - Atu3360 0.28 +0.2 398,079 + Atu3360 0.30 +0.4 398,087 - Atu3360 0.31 -0.4 398,270 - Atu3360 0.53 -0.5 398,330 + Atu3360 0.60 -0.5 398,338 - Atu3360 0.61 -2.0 398,369 - Atu3360 0.65 +0.2 398,515 - Atu3360 0.83 +1.8 398,540 + Atu3360 0.86 -0.4 398,553 - Atu3360 0.88 -3.9 398,948 - Atu3361 0.22 +0.6 398,948 - Atu3361 0.22 -1.3 398,948 - Atu3361 0.22 -2.0 398,948 - Atu3361 0.22 -1.1 398,960 + Atu3361 0.22 -0.4 398,987 + Atu3361 0.24 +0.2 399,005 - Atu3361 0.26 +0.4 399,029 - Atu3361 0.28 -0.4 399,096 - Atu3361 0.33 -3.6 399,155 - Atu3361 0.37 +0.1 399,167 + Atu3361 0.38 -2.6 399,268 + Atu3361 0.45 -0.4 399,268 + Atu3361 0.45 +0.2 399,281 - Atu3361 0.46 -1.7 399,395 + Atu3361 0.55 -2.0 399,426 + Atu3361 0.57 +1.4 399,496 - Atu3361 0.62 +3.2 399,596 - Atu3361 0.70 -1.5 399,702 + Atu3361 0.78 -1.1 399,720 - Atu3361 0.79 +0.2 399,778 + Atu3361 0.83 -0.4 399,783 + Atu3361 0.84 -2.5 399,786 - Atu3361 0.84 -1.8 399,938 + -0.7 399,946 - -1.9 399,972 - -1.1 400,014 + -0.7 400,035 - +1.0 400,091 - +0.1 400,158 - -1.0 400,345 + Atu3362 0.24 -0.6 400,353 - Atu3362 0.25 +0.5 400,408 - Atu3362 0.29 +2.4 400,408 - Atu3362 0.29 -1.6 400,453 + Atu3362 0.32 +0.5 400,575 - Atu3362 0.41 +0.1 400,589 + Atu3362 0.43 -0.4 400,618 - Atu3362 0.45 -0.4 400,644 - Atu3362 0.47 -1.5 400,663 - Atu3362 0.48 +0.1 400,700 + Atu3362 0.51 +2.0 400,700 + Atu3362 0.51 -0.5 400,763 + Atu3362 0.56 -0.2 400,782 + Atu3362 0.57 +1.2 400,782 - Atu3362 0.57 -0.4 400,944 - Atu3362 0.70 -1.1 400,952 + Atu3362 0.70 +1.2 400,967 - Atu3362 0.71 +0.9 400,990 + Atu3362 0.73 -0.0 401,004 + Atu3362 0.74 +5.8
Or see this region's nucleotide sequence