Experiment: AgroPhage_C04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3282 and Atu3283 are separated by 159 nucleotides Atu3283 and Atu3284 are separated by 4 nucleotides Atu3284 and Atu3285 are separated by 11 nucleotides
Atu3282: Atu3282 - sugar ABC transporter substrate-binding protein, at 307,348 to 308,598
Atu3282
Atu3283: Atu3283 - sugar ABC transporter permease, at 308,758 to 309,684
Atu3283
Atu3284: Atu3284 - sugar ABC transporter permease, at 309,689 to 310,546
Atu3284
Atu3285: Atu3285 - alpha-glucosidase, at 310,558 to 312,552
Atu3285
Position (kb) 308
309
310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 307.790 kb on + strand, within Atu3282 at 307.803 kb on - strand, within Atu3282 at 307.840 kb on + strand, within Atu3282 at 307.850 kb on - strand, within Atu3282 at 307.852 kb on + strand, within Atu3282 at 307.864 kb on + strand, within Atu3282 at 307.933 kb on + strand, within Atu3282 at 308.009 kb on + strand, within Atu3282 at 308.196 kb on + strand, within Atu3282 at 308.196 kb on + strand, within Atu3282 at 308.198 kb on - strand, within Atu3282 at 308.292 kb on + strand, within Atu3282 at 308.307 kb on - strand, within Atu3282 at 308.343 kb on + strand, within Atu3282 at 308.343 kb on - strand, within Atu3282 at 308.365 kb on + strand, within Atu3282 at 308.373 kb on + strand, within Atu3282 at 308.386 kb on + strand, within Atu3282 at 308.388 kb on + strand, within Atu3282 at 308.388 kb on + strand, within Atu3282 at 308.388 kb on + strand, within Atu3282 at 308.388 kb on + strand, within Atu3282 at 308.396 kb on - strand, within Atu3282 at 308.396 kb on - strand, within Atu3282 at 308.396 kb on - strand, within Atu3282 at 308.396 kb on - strand, within Atu3282 at 308.414 kb on - strand, within Atu3282 at 308.433 kb on + strand, within Atu3282 at 308.468 kb on + strand, within Atu3282 at 308.518 kb on - strand at 308.624 kb on + strand at 308.665 kb on - strand at 308.724 kb on + strand at 308.759 kb on - strand at 308.770 kb on + strand at 308.911 kb on + strand, within Atu3283 at 308.918 kb on - strand, within Atu3283 at 308.924 kb on + strand, within Atu3283 at 308.940 kb on + strand, within Atu3283 at 308.942 kb on + strand, within Atu3283 at 308.942 kb on + strand, within Atu3283 at 308.948 kb on - strand, within Atu3283 at 308.948 kb on - strand, within Atu3283 at 308.950 kb on - strand, within Atu3283 at 308.950 kb on - strand, within Atu3283 at 309.053 kb on - strand, within Atu3283 at 309.066 kb on + strand, within Atu3283 at 309.080 kb on + strand, within Atu3283 at 309.080 kb on + strand, within Atu3283 at 309.080 kb on + strand, within Atu3283 at 309.081 kb on - strand, within Atu3283 at 309.088 kb on - strand, within Atu3283 at 309.088 kb on - strand, within Atu3283 at 309.088 kb on - strand, within Atu3283 at 309.088 kb on - strand, within Atu3283 at 309.102 kb on + strand, within Atu3283 at 309.136 kb on + strand, within Atu3283 at 309.164 kb on + strand, within Atu3283 at 309.172 kb on + strand, within Atu3283 at 309.213 kb on + strand, within Atu3283 at 309.223 kb on + strand, within Atu3283 at 309.223 kb on + strand, within Atu3283 at 309.385 kb on + strand, within Atu3283 at 309.446 kb on - strand, within Atu3283 at 309.502 kb on - strand, within Atu3283 at 309.550 kb on - strand, within Atu3283 at 309.556 kb on + strand, within Atu3283 at 309.567 kb on + strand, within Atu3283 at 309.573 kb on - strand, within Atu3283 at 309.575 kb on - strand, within Atu3283 at 309.609 kb on - strand at 309.678 kb on + strand at 309.694 kb on - strand at 309.721 kb on - strand at 309.833 kb on - strand, within Atu3284 at 309.845 kb on - strand, within Atu3284 at 309.923 kb on + strand, within Atu3284 at 309.923 kb on - strand, within Atu3284 at 309.944 kb on + strand, within Atu3284 at 309.957 kb on - strand, within Atu3284 at 310.019 kb on - strand, within Atu3284 at 310.123 kb on - strand, within Atu3284 at 310.141 kb on - strand, within Atu3284 at 310.144 kb on + strand, within Atu3284 at 310.152 kb on - strand, within Atu3284 at 310.152 kb on - strand, within Atu3284 at 310.154 kb on + strand, within Atu3284 at 310.163 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.272 kb on - strand, within Atu3284 at 310.272 kb on - strand, within Atu3284 at 310.332 kb on + strand, within Atu3284 at 310.342 kb on + strand, within Atu3284 at 310.359 kb on + strand, within Atu3284 at 310.511 kb on + strand at 310.541 kb on + strand at 310.548 kb on + strand at 310.556 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C04 remove 307,790 + Atu3282 0.35 +0.0 307,803 - Atu3282 0.36 +0.2 307,840 + Atu3282 0.39 -2.1 307,850 - Atu3282 0.40 -1.4 307,852 + Atu3282 0.40 -0.5 307,864 + Atu3282 0.41 -1.0 307,933 + Atu3282 0.47 -1.0 308,009 + Atu3282 0.53 -0.0 308,196 + Atu3282 0.68 -0.6 308,196 + Atu3282 0.68 -2.2 308,198 - Atu3282 0.68 -0.2 308,292 + Atu3282 0.75 -2.0 308,307 - Atu3282 0.77 -1.6 308,343 + Atu3282 0.80 +0.1 308,343 - Atu3282 0.80 +0.7 308,365 + Atu3282 0.81 -0.8 308,373 + Atu3282 0.82 -0.9 308,386 + Atu3282 0.83 -2.0 308,388 + Atu3282 0.83 -1.7 308,388 + Atu3282 0.83 -1.0 308,388 + Atu3282 0.83 -1.4 308,388 + Atu3282 0.83 -0.3 308,396 - Atu3282 0.84 +0.8 308,396 - Atu3282 0.84 -2.0 308,396 - Atu3282 0.84 -1.2 308,396 - Atu3282 0.84 -1.2 308,414 - Atu3282 0.85 +0.3 308,433 + Atu3282 0.87 -0.6 308,468 + Atu3282 0.90 +1.9 308,518 - -0.9 308,624 + +0.1 308,665 - +0.9 308,724 + -1.3 308,759 - +0.7 308,770 + +0.5 308,911 + Atu3283 0.17 -0.4 308,918 - Atu3283 0.17 -1.7 308,924 + Atu3283 0.18 +1.1 308,940 + Atu3283 0.20 +0.2 308,942 + Atu3283 0.20 +0.5 308,942 + Atu3283 0.20 -0.2 308,948 - Atu3283 0.20 -0.5 308,948 - Atu3283 0.20 -0.3 308,950 - Atu3283 0.21 +2.4 308,950 - Atu3283 0.21 -0.2 309,053 - Atu3283 0.32 -0.0 309,066 + Atu3283 0.33 +1.8 309,080 + Atu3283 0.35 -2.3 309,080 + Atu3283 0.35 -0.6 309,080 + Atu3283 0.35 +0.2 309,081 - Atu3283 0.35 +3.5 309,088 - Atu3283 0.36 +0.5 309,088 - Atu3283 0.36 -0.7 309,088 - Atu3283 0.36 -0.8 309,088 - Atu3283 0.36 +0.4 309,102 + Atu3283 0.37 -0.4 309,136 + Atu3283 0.41 +1.1 309,164 + Atu3283 0.44 +0.7 309,172 + Atu3283 0.45 -0.1 309,213 + Atu3283 0.49 -0.9 309,223 + Atu3283 0.50 +0.4 309,223 + Atu3283 0.50 +1.0 309,385 + Atu3283 0.68 +0.9 309,446 - Atu3283 0.74 +0.5 309,502 - Atu3283 0.80 -1.0 309,550 - Atu3283 0.85 -0.6 309,556 + Atu3283 0.86 +1.9 309,567 + Atu3283 0.87 +2.1 309,573 - Atu3283 0.88 +1.6 309,575 - Atu3283 0.88 -0.9 309,609 - +4.2 309,678 + -1.2 309,694 - +0.9 309,721 - +0.4 309,833 - Atu3284 0.17 -1.5 309,845 - Atu3284 0.18 -1.5 309,923 + Atu3284 0.27 +0.2 309,923 - Atu3284 0.27 -0.3 309,944 + Atu3284 0.30 +1.0 309,957 - Atu3284 0.31 -3.1 310,019 - Atu3284 0.38 -0.8 310,123 - Atu3284 0.51 -1.3 310,141 - Atu3284 0.53 +1.2 310,144 + Atu3284 0.53 +2.2 310,152 - Atu3284 0.54 -1.4 310,152 - Atu3284 0.54 +0.5 310,154 + Atu3284 0.54 -0.5 310,163 + Atu3284 0.55 -0.2 310,264 + Atu3284 0.67 +0.1 310,264 + Atu3284 0.67 -0.6 310,264 + Atu3284 0.67 -1.3 310,264 + Atu3284 0.67 -1.4 310,264 + Atu3284 0.67 -1.7 310,272 - Atu3284 0.68 +0.2 310,272 - Atu3284 0.68 +1.2 310,332 + Atu3284 0.75 +0.1 310,342 + Atu3284 0.76 -0.4 310,359 + Atu3284 0.78 +0.2 310,511 + -2.8 310,541 + +0.0 310,548 + -0.1 310,556 - +0.2
Or see this region's nucleotide sequence