Experiment: AgroPhage_C04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3138 and Atu3139 overlap by 4 nucleotides Atu3139 and Atu3140 are separated by 25 nucleotides
Atu3138: Atu3138 - hypothetical protein, at 146,107 to 146,985
Atu3138
Atu3139: Atu3139 - hypothetical protein, at 146,982 to 148,118
Atu3139
Atu3140: Atu3140 - 5-dehydro-4-deoxyglucarate dehydratase, at 148,144 to 149,055
Atu3140
Position (kb) 146
147
148
149 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 145.989 kb on + strand at 146.030 kb on + strand at 146.338 kb on + strand, within Atu3138 at 146.414 kb on - strand, within Atu3138 at 146.531 kb on + strand, within Atu3138 at 146.766 kb on + strand, within Atu3138 at 146.766 kb on + strand, within Atu3138 at 146.779 kb on - strand, within Atu3138 at 146.789 kb on - strand, within Atu3138 at 146.804 kb on - strand, within Atu3138 at 146.804 kb on - strand, within Atu3138 at 146.862 kb on + strand, within Atu3138 at 146.870 kb on - strand, within Atu3138 at 146.952 kb on - strand at 146.995 kb on + strand at 147.077 kb on - strand at 147.113 kb on + strand, within Atu3139 at 147.121 kb on - strand, within Atu3139 at 147.121 kb on - strand, within Atu3139 at 147.182 kb on - strand, within Atu3139 at 147.231 kb on - strand, within Atu3139 at 147.520 kb on + strand, within Atu3139 at 147.526 kb on - strand, within Atu3139 at 147.528 kb on - strand, within Atu3139 at 147.528 kb on - strand, within Atu3139 at 147.528 kb on - strand, within Atu3139 at 147.554 kb on + strand, within Atu3139 at 147.711 kb on - strand, within Atu3139 at 147.720 kb on + strand, within Atu3139 at 147.769 kb on - strand, within Atu3139 at 147.786 kb on - strand, within Atu3139 at 147.792 kb on - strand, within Atu3139 at 147.822 kb on + strand, within Atu3139 at 147.822 kb on + strand, within Atu3139 at 147.822 kb on + strand, within Atu3139 at 147.844 kb on - strand, within Atu3139 at 147.859 kb on - strand, within Atu3139 at 147.866 kb on + strand, within Atu3139 at 147.874 kb on - strand, within Atu3139 at 147.874 kb on - strand, within Atu3139 at 147.935 kb on - strand, within Atu3139 at 147.939 kb on - strand, within Atu3139 at 147.944 kb on - strand, within Atu3139 at 147.975 kb on + strand, within Atu3139 at 148.044 kb on + strand at 148.074 kb on - strand at 148.168 kb on + strand at 148.210 kb on + strand at 148.243 kb on + strand, within Atu3140 at 148.251 kb on + strand, within Atu3140 at 148.280 kb on + strand, within Atu3140 at 148.280 kb on + strand, within Atu3140 at 148.294 kb on - strand, within Atu3140 at 148.329 kb on - strand, within Atu3140 at 148.371 kb on + strand, within Atu3140 at 148.376 kb on + strand, within Atu3140 at 148.376 kb on + strand, within Atu3140 at 148.384 kb on - strand, within Atu3140 at 148.384 kb on - strand, within Atu3140 at 148.419 kb on - strand, within Atu3140 at 148.440 kb on - strand, within Atu3140 at 148.440 kb on - strand, within Atu3140 at 148.681 kb on - strand, within Atu3140 at 148.888 kb on - strand, within Atu3140 at 148.893 kb on - strand, within Atu3140 at 148.939 kb on + strand, within Atu3140 at 148.958 kb on - strand, within Atu3140 at 149.043 kb on + strand at 149.056 kb on - strand at 149.056 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C04 remove 145,989 + -1.1 146,030 + -1.2 146,338 + Atu3138 0.26 -2.9 146,414 - Atu3138 0.35 -0.2 146,531 + Atu3138 0.48 -2.1 146,766 + Atu3138 0.75 -1.1 146,766 + Atu3138 0.75 -0.8 146,779 - Atu3138 0.76 -0.6 146,789 - Atu3138 0.78 +0.3 146,804 - Atu3138 0.79 -0.5 146,804 - Atu3138 0.79 -0.2 146,862 + Atu3138 0.86 +0.4 146,870 - Atu3138 0.87 +0.6 146,952 - -0.3 146,995 + +0.6 147,077 - -0.6 147,113 + Atu3139 0.12 +0.8 147,121 - Atu3139 0.12 +0.3 147,121 - Atu3139 0.12 -1.2 147,182 - Atu3139 0.18 +0.3 147,231 - Atu3139 0.22 -2.3 147,520 + Atu3139 0.47 -0.1 147,526 - Atu3139 0.48 -0.9 147,528 - Atu3139 0.48 +0.5 147,528 - Atu3139 0.48 -1.0 147,528 - Atu3139 0.48 -1.4 147,554 + Atu3139 0.50 -2.0 147,711 - Atu3139 0.64 -0.4 147,720 + Atu3139 0.65 -1.3 147,769 - Atu3139 0.69 +0.5 147,786 - Atu3139 0.71 -1.5 147,792 - Atu3139 0.71 -0.3 147,822 + Atu3139 0.74 +0.2 147,822 + Atu3139 0.74 -0.5 147,822 + Atu3139 0.74 -1.5 147,844 - Atu3139 0.76 -0.2 147,859 - Atu3139 0.77 -2.0 147,866 + Atu3139 0.78 -0.6 147,874 - Atu3139 0.78 +0.2 147,874 - Atu3139 0.78 -0.1 147,935 - Atu3139 0.84 -2.5 147,939 - Atu3139 0.84 +1.0 147,944 - Atu3139 0.85 -1.8 147,975 + Atu3139 0.87 -1.3 148,044 + +0.8 148,074 - -0.1 148,168 + -0.9 148,210 + -0.6 148,243 + Atu3140 0.11 -0.9 148,251 + Atu3140 0.12 +1.4 148,280 + Atu3140 0.15 -0.2 148,280 + Atu3140 0.15 +0.0 148,294 - Atu3140 0.16 +0.5 148,329 - Atu3140 0.20 -0.9 148,371 + Atu3140 0.25 -0.9 148,376 + Atu3140 0.25 -1.1 148,376 + Atu3140 0.25 +0.8 148,384 - Atu3140 0.26 +0.7 148,384 - Atu3140 0.26 -1.0 148,419 - Atu3140 0.30 -0.3 148,440 - Atu3140 0.32 -0.0 148,440 - Atu3140 0.32 +0.4 148,681 - Atu3140 0.59 +0.4 148,888 - Atu3140 0.82 +1.2 148,893 - Atu3140 0.82 -0.8 148,939 + Atu3140 0.87 -0.5 148,958 - Atu3140 0.89 -0.1 149,043 + -2.0 149,056 - -0.2 149,056 - +0.9
Or see this region's nucleotide sequence