Experiment: AgroPhage_C04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0944 and Atu0945 are separated by 258 nucleotides Atu0945 and Atu0946 are separated by 150 nucleotides
Atu0944: Atu0944 - sucrose hydrolase, at 931,736 to 933,367
Atu0944
Atu0945: Atu0945 - hypothetical protein, at 933,626 to 935,086
Atu0945
Atu0946: Atu0946 - dehydrogenase, at 935,237 to 936,337
Atu0946
Position (kb) 933
934
935
936 Strain fitness (log2 ratio) -2
-1
0
1 at 932.695 kb on + strand, within Atu0944 at 932.735 kb on - strand, within Atu0944 at 932.742 kb on + strand, within Atu0944 at 932.750 kb on - strand, within Atu0944 at 932.750 kb on - strand, within Atu0944 at 932.752 kb on + strand, within Atu0944 at 932.760 kb on - strand, within Atu0944 at 932.796 kb on - strand, within Atu0944 at 932.838 kb on - strand, within Atu0944 at 932.855 kb on + strand, within Atu0944 at 932.903 kb on - strand, within Atu0944 at 932.905 kb on - strand, within Atu0944 at 932.932 kb on - strand, within Atu0944 at 932.982 kb on + strand, within Atu0944 at 933.030 kb on - strand, within Atu0944 at 933.058 kb on - strand, within Atu0944 at 933.117 kb on + strand, within Atu0944 at 933.130 kb on - strand, within Atu0944 at 933.171 kb on - strand, within Atu0944 at 933.213 kb on + strand at 933.226 kb on - strand at 933.313 kb on + strand at 933.375 kb on - strand at 933.440 kb on - strand at 933.690 kb on - strand at 933.956 kb on - strand, within Atu0945 at 933.999 kb on + strand, within Atu0945 at 934.007 kb on - strand, within Atu0945 at 934.007 kb on - strand, within Atu0945 at 934.007 kb on - strand, within Atu0945 at 934.007 kb on - strand, within Atu0945 at 934.007 kb on - strand, within Atu0945 at 934.124 kb on + strand, within Atu0945 at 934.124 kb on + strand, within Atu0945 at 934.132 kb on - strand, within Atu0945 at 934.140 kb on + strand, within Atu0945 at 934.153 kb on - strand, within Atu0945 at 934.154 kb on - strand, within Atu0945 at 934.154 kb on - strand, within Atu0945 at 934.279 kb on + strand, within Atu0945 at 934.343 kb on - strand, within Atu0945 at 934.343 kb on - strand, within Atu0945 at 934.355 kb on - strand, within Atu0945 at 934.469 kb on + strand, within Atu0945 at 934.578 kb on - strand, within Atu0945 at 934.698 kb on - strand, within Atu0945 at 934.727 kb on - strand, within Atu0945 at 934.835 kb on - strand, within Atu0945 at 934.923 kb on + strand, within Atu0945 at 934.952 kb on - strand at 935.025 kb on - strand at 935.039 kb on - strand at 935.169 kb on - strand at 935.173 kb on + strand at 935.173 kb on + strand at 935.230 kb on + strand at 935.257 kb on + strand at 935.276 kb on - strand at 935.276 kb on - strand at 935.366 kb on + strand, within Atu0946 at 935.374 kb on - strand, within Atu0946 at 935.374 kb on - strand, within Atu0946 at 935.399 kb on + strand, within Atu0946 at 935.529 kb on + strand, within Atu0946 at 935.529 kb on + strand, within Atu0946 at 935.537 kb on - strand, within Atu0946 at 935.628 kb on + strand, within Atu0946 at 935.970 kb on + strand, within Atu0946 at 935.973 kb on - strand, within Atu0946 at 936.014 kb on + strand, within Atu0946 at 936.014 kb on + strand, within Atu0946 at 936.022 kb on - strand, within Atu0946 at 936.050 kb on - strand, within Atu0946 at 936.060 kb on - strand, within Atu0946
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C04 remove 932,695 + Atu0944 0.59 -1.8 932,735 - Atu0944 0.61 -0.1 932,742 + Atu0944 0.62 -1.2 932,750 - Atu0944 0.62 -1.0 932,750 - Atu0944 0.62 +0.3 932,752 + Atu0944 0.62 -1.4 932,760 - Atu0944 0.63 +1.0 932,796 - Atu0944 0.65 -0.4 932,838 - Atu0944 0.68 +0.9 932,855 + Atu0944 0.69 -0.1 932,903 - Atu0944 0.72 -2.4 932,905 - Atu0944 0.72 +0.5 932,932 - Atu0944 0.73 -2.3 932,982 + Atu0944 0.76 -1.3 933,030 - Atu0944 0.79 -0.4 933,058 - Atu0944 0.81 -1.8 933,117 + Atu0944 0.85 -0.9 933,130 - Atu0944 0.85 -1.1 933,171 - Atu0944 0.88 +0.7 933,213 + -1.1 933,226 - +0.2 933,313 + -0.0 933,375 - +0.7 933,440 - +0.1 933,690 - +1.7 933,956 - Atu0945 0.23 -0.8 933,999 + Atu0945 0.26 -1.3 934,007 - Atu0945 0.26 -0.6 934,007 - Atu0945 0.26 -1.5 934,007 - Atu0945 0.26 -0.2 934,007 - Atu0945 0.26 -1.5 934,007 - Atu0945 0.26 +0.1 934,124 + Atu0945 0.34 +0.0 934,124 + Atu0945 0.34 -2.2 934,132 - Atu0945 0.35 +0.8 934,140 + Atu0945 0.35 +0.7 934,153 - Atu0945 0.36 +0.5 934,154 - Atu0945 0.36 +0.2 934,154 - Atu0945 0.36 -0.4 934,279 + Atu0945 0.45 -1.2 934,343 - Atu0945 0.49 +0.7 934,343 - Atu0945 0.49 -0.2 934,355 - Atu0945 0.50 -0.6 934,469 + Atu0945 0.58 +0.3 934,578 - Atu0945 0.65 +0.8 934,698 - Atu0945 0.73 -0.5 934,727 - Atu0945 0.75 -0.9 934,835 - Atu0945 0.83 -2.6 934,923 + Atu0945 0.89 +0.6 934,952 - +0.2 935,025 - +0.7 935,039 - -0.7 935,169 - -1.1 935,173 + -0.0 935,173 + -0.4 935,230 + -0.6 935,257 + +0.4 935,276 - +0.3 935,276 - +0.2 935,366 + Atu0946 0.12 -0.6 935,374 - Atu0946 0.12 -0.3 935,374 - Atu0946 0.12 -2.7 935,399 + Atu0946 0.15 -1.3 935,529 + Atu0946 0.27 -1.0 935,529 + Atu0946 0.27 -0.1 935,537 - Atu0946 0.27 -0.1 935,628 + Atu0946 0.36 -0.1 935,970 + Atu0946 0.67 -1.0 935,973 - Atu0946 0.67 -1.2 936,014 + Atu0946 0.71 +1.6 936,014 + Atu0946 0.71 +0.4 936,022 - Atu0946 0.71 -0.6 936,050 - Atu0946 0.74 -0.8 936,060 - Atu0946 0.75 -0.6
Or see this region's nucleotide sequence