Experiment: AgroPhage_C04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0937 and Atu0938 are separated by 41 nucleotides Atu0938 and Atu0939 are separated by 322 nucleotides Atu0939 and Atu0940 overlap by 1 nucleotides
Atu0937: Atu0937 - copper transporting ATPase, at 925,700 to 928,225
Atu0937
Atu0938: Atu0938 - transcriptional regulator, MerR family, at 928,267 to 928,644
Atu0938
Atu0939: Atu0939 - PemI protein, at 928,967 to 929,233
Atu0939
Atu0940: Atu0940 - PemK protein, at 929,233 to 929,592
Atu0940
Position (kb) 928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 927.276 kb on + strand, within Atu0937 at 927.347 kb on + strand, within Atu0937 at 927.347 kb on + strand, within Atu0937 at 927.347 kb on + strand, within Atu0937 at 927.347 kb on + strand, within Atu0937 at 927.347 kb on + strand, within Atu0937 at 927.382 kb on - strand, within Atu0937 at 927.385 kb on + strand, within Atu0937 at 927.417 kb on + strand, within Atu0937 at 927.425 kb on - strand, within Atu0937 at 927.486 kb on + strand, within Atu0937 at 927.488 kb on + strand, within Atu0937 at 927.548 kb on + strand, within Atu0937 at 927.575 kb on + strand, within Atu0937 at 927.589 kb on + strand, within Atu0937 at 927.589 kb on + strand, within Atu0937 at 927.597 kb on - strand, within Atu0937 at 927.597 kb on - strand, within Atu0937 at 927.597 kb on - strand, within Atu0937 at 927.687 kb on - strand, within Atu0937 at 927.687 kb on - strand, within Atu0937 at 927.718 kb on + strand, within Atu0937 at 927.853 kb on - strand, within Atu0937 at 927.853 kb on - strand, within Atu0937 at 927.853 kb on - strand, within Atu0937 at 927.853 kb on - strand, within Atu0937 at 927.897 kb on - strand, within Atu0937 at 927.945 kb on + strand, within Atu0937 at 927.985 kb on + strand at 928.061 kb on - strand at 928.093 kb on - strand at 928.115 kb on - strand at 928.150 kb on + strand at 928.192 kb on + strand at 928.192 kb on + strand at 928.207 kb on - strand at 928.295 kb on - strand at 928.304 kb on - strand at 928.340 kb on - strand, within Atu0938 at 928.415 kb on - strand, within Atu0938 at 928.435 kb on + strand, within Atu0938 at 928.435 kb on + strand, within Atu0938 at 928.520 kb on - strand, within Atu0938 at 928.583 kb on - strand, within Atu0938 at 928.709 kb on - strand at 928.709 kb on - strand at 928.719 kb on + strand at 928.739 kb on - strand at 928.812 kb on + strand at 928.820 kb on - strand at 928.820 kb on - strand at 928.820 kb on - strand at 928.845 kb on - strand at 928.845 kb on - strand at 928.957 kb on - strand at 928.991 kb on + strand at 929.009 kb on - strand, within Atu0939 at 929.012 kb on - strand, within Atu0939 at 929.162 kb on - strand, within Atu0939 at 929.256 kb on + strand at 929.326 kb on + strand, within Atu0940 at 929.414 kb on + strand, within Atu0940 at 929.477 kb on - strand, within Atu0940 at 929.508 kb on - strand, within Atu0940 at 929.508 kb on - strand, within Atu0940 at 929.597 kb on + strand at 929.598 kb on + strand at 929.598 kb on + strand at 929.605 kb on - strand at 929.606 kb on - strand at 929.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C04 remove 927,276 + Atu0937 0.62 -0.3 927,347 + Atu0937 0.65 -1.9 927,347 + Atu0937 0.65 +0.4 927,347 + Atu0937 0.65 +2.3 927,347 + Atu0937 0.65 +1.8 927,347 + Atu0937 0.65 +0.3 927,382 - Atu0937 0.67 +0.2 927,385 + Atu0937 0.67 -1.8 927,417 + Atu0937 0.68 -0.7 927,425 - Atu0937 0.68 -3.0 927,486 + Atu0937 0.71 -0.5 927,488 + Atu0937 0.71 -2.5 927,548 + Atu0937 0.73 -2.4 927,575 + Atu0937 0.74 -2.0 927,589 + Atu0937 0.75 -1.2 927,589 + Atu0937 0.75 +0.5 927,597 - Atu0937 0.75 -1.8 927,597 - Atu0937 0.75 -0.4 927,597 - Atu0937 0.75 +1.5 927,687 - Atu0937 0.79 -1.7 927,687 - Atu0937 0.79 -0.4 927,718 + Atu0937 0.80 +0.2 927,853 - Atu0937 0.85 -1.1 927,853 - Atu0937 0.85 -0.3 927,853 - Atu0937 0.85 -0.0 927,853 - Atu0937 0.85 -0.8 927,897 - Atu0937 0.87 -1.1 927,945 + Atu0937 0.89 -1.0 927,985 + +0.1 928,061 - -0.8 928,093 - +0.3 928,115 - +1.3 928,150 + +0.2 928,192 + -0.5 928,192 + +0.3 928,207 - +0.5 928,295 - -0.1 928,304 - -0.5 928,340 - Atu0938 0.19 -1.2 928,415 - Atu0938 0.39 -2.6 928,435 + Atu0938 0.44 -0.5 928,435 + Atu0938 0.44 -2.9 928,520 - Atu0938 0.67 +0.5 928,583 - Atu0938 0.84 -1.0 928,709 - +0.8 928,709 - -1.1 928,719 + +0.3 928,739 - +1.1 928,812 + -0.7 928,820 - -1.3 928,820 - -0.8 928,820 - -1.2 928,845 - +0.3 928,845 - -0.3 928,957 - +0.8 928,991 + +0.1 929,009 - Atu0939 0.16 +0.0 929,012 - Atu0939 0.17 -0.3 929,162 - Atu0939 0.73 -0.5 929,256 + +2.3 929,326 + Atu0940 0.26 +3.1 929,414 + Atu0940 0.50 -0.2 929,477 - Atu0940 0.68 -0.9 929,508 - Atu0940 0.76 +0.5 929,508 - Atu0940 0.76 -1.1 929,597 + -0.7 929,598 + -0.1 929,598 + +1.8 929,605 - -0.3 929,606 - -1.0 929,629 - -0.2
Or see this region's nucleotide sequence