Experiment: AgroPhage_C04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0739 and Atu0740 are separated by 119 nucleotides Atu0740 and Atu0741 are separated by 38 nucleotides Atu0741 and Atu0742 are separated by 42 nucleotides Atu0742 and Atu8012 are separated by 53 nucleotides
Atu0739: Atu0739 - hypothetical protein, at 738,692 to 739,654
Atu0739
Atu0740: Atu0740 - transcriptional regulator, AsnC family, at 739,774 to 740,226
Atu0740
Atu0741: Atu0741 - hypothetical protein, at 740,265 to 740,648
Atu0741
Atu0742: Atu0742 - hypothetical protein, at 740,691 to 741,062
Atu0742
Atu8012: Atu8012 - hypothetical protein, at 741,116 to 741,337
Atu8012
Position (kb) 739
740
741 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 738.935 kb on + strand, within Atu0739 at 739.104 kb on - strand, within Atu0739 at 739.132 kb on + strand, within Atu0739 at 739.248 kb on + strand, within Atu0739 at 739.289 kb on - strand, within Atu0739 at 739.290 kb on + strand, within Atu0739 at 739.460 kb on - strand, within Atu0739 at 739.688 kb on - strand at 739.839 kb on - strand, within Atu0740 at 739.855 kb on + strand, within Atu0740 at 739.901 kb on + strand, within Atu0740 at 739.932 kb on + strand, within Atu0740 at 739.955 kb on - strand, within Atu0740 at 740.025 kb on - strand, within Atu0740 at 740.057 kb on + strand, within Atu0740 at 740.065 kb on - strand, within Atu0740 at 740.154 kb on + strand, within Atu0740 at 740.177 kb on - strand, within Atu0740 at 740.773 kb on + strand, within Atu0742 at 740.797 kb on - strand, within Atu0742 at 740.797 kb on - strand, within Atu0742 at 740.833 kb on + strand, within Atu0742 at 740.833 kb on + strand, within Atu0742 at 740.889 kb on - strand, within Atu0742 at 740.930 kb on - strand, within Atu0742 at 741.016 kb on - strand, within Atu0742 at 741.022 kb on - strand, within Atu0742 at 741.221 kb on + strand, within Atu8012
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C04 remove 738,935 + Atu0739 0.25 -1.6 739,104 - Atu0739 0.43 +0.7 739,132 + Atu0739 0.46 -1.1 739,248 + Atu0739 0.58 +1.9 739,289 - Atu0739 0.62 -0.8 739,290 + Atu0739 0.62 -1.8 739,460 - Atu0739 0.80 +2.9 739,688 - -0.4 739,839 - Atu0740 0.14 +0.7 739,855 + Atu0740 0.18 -0.3 739,901 + Atu0740 0.28 -0.0 739,932 + Atu0740 0.35 +0.3 739,955 - Atu0740 0.40 +0.4 740,025 - Atu0740 0.55 -1.3 740,057 + Atu0740 0.62 +0.6 740,065 - Atu0740 0.64 -1.9 740,154 + Atu0740 0.84 +1.0 740,177 - Atu0740 0.89 -1.1 740,773 + Atu0742 0.22 +1.6 740,797 - Atu0742 0.28 +0.1 740,797 - Atu0742 0.28 -0.1 740,833 + Atu0742 0.38 -1.6 740,833 + Atu0742 0.38 -1.7 740,889 - Atu0742 0.53 -1.5 740,930 - Atu0742 0.64 +0.9 741,016 - Atu0742 0.87 -0.3 741,022 - Atu0742 0.89 -1.1 741,221 + Atu8012 0.47 +1.3
Or see this region's nucleotide sequence