Experiment: AgroPhage_C04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0449 and Atu0450 are separated by 109 nucleotides Atu0450 and Atu8125 are separated by 244 nucleotides Atu8125 and Atu8083 are separated by 82 nucleotides
Atu0449: Atu0449 - hypothetical protein, at 443,396 to 444,616
Atu0449
Atu0450: Atu0450 - transcription antitermination protein, at 444,726 to 445,292
Atu0450
Atu8125: Atu8125 - hypothetical protein, at 445,537 to 446,106
Atu8125
Atu8083: Atu8083 - hypothetical protein, at 446,189 to 447,001
Atu8083
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 443.774 kb on + strand, within Atu0449 at 443.964 kb on - strand, within Atu0449 at 444.008 kb on - strand, within Atu0449 at 444.035 kb on - strand, within Atu0449 at 444.235 kb on - strand, within Atu0449 at 444.240 kb on - strand, within Atu0449 at 444.287 kb on - strand, within Atu0449 at 444.339 kb on - strand, within Atu0449 at 444.339 kb on - strand, within Atu0449 at 444.339 kb on - strand, within Atu0449 at 444.376 kb on - strand, within Atu0449 at 444.376 kb on - strand, within Atu0449 at 444.378 kb on - strand, within Atu0449 at 444.389 kb on + strand, within Atu0449 at 444.401 kb on + strand, within Atu0449 at 444.408 kb on + strand, within Atu0449 at 444.408 kb on - strand, within Atu0449 at 444.409 kb on - strand, within Atu0449 at 444.427 kb on - strand, within Atu0449 at 444.439 kb on + strand, within Atu0449 at 444.464 kb on - strand, within Atu0449 at 444.480 kb on - strand, within Atu0449 at 444.518 kb on - strand at 444.649 kb on + strand at 444.656 kb on + strand at 444.770 kb on - strand at 444.776 kb on + strand at 444.922 kb on + strand, within Atu0450 at 444.932 kb on + strand, within Atu0450 at 444.935 kb on - strand, within Atu0450 at 444.940 kb on - strand, within Atu0450 at 444.940 kb on - strand, within Atu0450 at 444.967 kb on + strand, within Atu0450 at 444.970 kb on - strand, within Atu0450 at 444.977 kb on + strand, within Atu0450 at 444.993 kb on - strand, within Atu0450 at 445.010 kb on + strand, within Atu0450 at 445.010 kb on + strand, within Atu0450 at 445.018 kb on - strand, within Atu0450 at 445.092 kb on - strand, within Atu0450 at 445.099 kb on - strand, within Atu0450 at 445.101 kb on + strand, within Atu0450 at 445.103 kb on + strand, within Atu0450 at 445.111 kb on - strand, within Atu0450 at 445.150 kb on - strand, within Atu0450 at 445.224 kb on - strand, within Atu0450 at 445.227 kb on - strand, within Atu0450 at 445.265 kb on - strand at 445.267 kb on + strand at 445.275 kb on - strand at 445.292 kb on + strand at 445.300 kb on - strand at 445.300 kb on - strand at 445.305 kb on - strand at 445.443 kb on + strand at 445.481 kb on + strand at 445.508 kb on + strand at 445.571 kb on + strand at 445.624 kb on + strand, within Atu8125 at 445.745 kb on + strand, within Atu8125 at 445.871 kb on + strand, within Atu8125 at 445.874 kb on - strand, within Atu8125 at 445.879 kb on - strand, within Atu8125 at 445.889 kb on + strand, within Atu8125 at 445.907 kb on + strand, within Atu8125 at 445.934 kb on + strand, within Atu8125 at 445.939 kb on + strand, within Atu8125 at 445.947 kb on - strand, within Atu8125 at 445.969 kb on + strand, within Atu8125 at 445.977 kb on - strand, within Atu8125 at 445.979 kb on - strand, within Atu8125 at 445.993 kb on - strand, within Atu8125 at 446.068 kb on - strand at 446.126 kb on + strand at 446.126 kb on + strand at 446.126 kb on + strand at 446.134 kb on - strand at 446.153 kb on + strand at 446.165 kb on - strand at 446.193 kb on - strand at 446.217 kb on - strand at 446.224 kb on + strand at 446.288 kb on - strand, within Atu8083
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C04 remove 443,774 + Atu0449 0.31 +1.5 443,964 - Atu0449 0.47 -0.9 444,008 - Atu0449 0.50 +0.9 444,035 - Atu0449 0.52 +1.6 444,235 - Atu0449 0.69 +0.3 444,240 - Atu0449 0.69 -0.8 444,287 - Atu0449 0.73 +0.7 444,339 - Atu0449 0.77 -1.0 444,339 - Atu0449 0.77 -0.1 444,339 - Atu0449 0.77 -2.8 444,376 - Atu0449 0.80 -0.1 444,376 - Atu0449 0.80 -0.9 444,378 - Atu0449 0.80 +0.9 444,389 + Atu0449 0.81 +0.7 444,401 + Atu0449 0.82 -0.7 444,408 + Atu0449 0.83 -0.5 444,408 - Atu0449 0.83 +1.6 444,409 - Atu0449 0.83 -0.5 444,427 - Atu0449 0.84 -1.3 444,439 + Atu0449 0.85 -0.8 444,464 - Atu0449 0.87 -0.3 444,480 - Atu0449 0.89 +0.1 444,518 - -0.4 444,649 + +1.7 444,656 + +0.4 444,770 - -0.8 444,776 + -0.1 444,922 + Atu0450 0.35 +0.8 444,932 + Atu0450 0.36 +1.6 444,935 - Atu0450 0.37 +1.4 444,940 - Atu0450 0.38 +0.6 444,940 - Atu0450 0.38 -0.9 444,967 + Atu0450 0.43 +4.7 444,970 - Atu0450 0.43 +1.2 444,977 + Atu0450 0.44 +2.2 444,993 - Atu0450 0.47 +2.2 445,010 + Atu0450 0.50 +0.6 445,010 + Atu0450 0.50 +1.1 445,018 - Atu0450 0.51 +1.5 445,092 - Atu0450 0.65 +1.5 445,099 - Atu0450 0.66 +1.7 445,101 + Atu0450 0.66 +1.6 445,103 + Atu0450 0.66 +1.3 445,111 - Atu0450 0.68 +2.2 445,150 - Atu0450 0.75 +0.6 445,224 - Atu0450 0.88 +2.2 445,227 - Atu0450 0.88 +0.1 445,265 - -1.4 445,267 + +0.4 445,275 - +1.8 445,292 + -1.2 445,300 - +0.9 445,300 - +0.9 445,305 - +0.2 445,443 + -0.1 445,481 + +0.4 445,508 + +0.2 445,571 + +0.5 445,624 + Atu8125 0.15 +1.0 445,745 + Atu8125 0.36 +0.1 445,871 + Atu8125 0.59 -0.4 445,874 - Atu8125 0.59 +0.3 445,879 - Atu8125 0.60 +0.7 445,889 + Atu8125 0.62 +1.7 445,907 + Atu8125 0.65 +1.9 445,934 + Atu8125 0.70 +0.7 445,939 + Atu8125 0.71 -1.6 445,947 - Atu8125 0.72 +1.0 445,969 + Atu8125 0.76 -0.0 445,977 - Atu8125 0.77 +0.3 445,979 - Atu8125 0.78 +0.3 445,993 - Atu8125 0.80 -1.2 446,068 - +0.4 446,126 + -0.0 446,126 + -0.9 446,126 + +0.6 446,134 - +0.8 446,153 + +0.3 446,165 - +1.0 446,193 - +2.5 446,217 - +1.1 446,224 + +1.2 446,288 - Atu8083 0.12 +0.0
Or see this region's nucleotide sequence