Strain Fitness in Agrobacterium fabrum C58 around Atu0287

Experiment: AgroPhage_C04

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0286 and Atu0287 overlap by 1 nucleotidesAtu0287 and Atu0288 are separated by 41 nucleotides Atu0286: Atu0286 - hypothetical protein, at 279,498 to 280,619 Atu0286 Atu0287: Atu0287 - hypothetical protein, at 280,619 to 282,160 Atu0287 Atu0288: Atu0288 - hypothetical protein, at 282,202 to 283,479 Atu0288 Position (kb) 280 281 282 283Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 279.630 kb on - strand, within Atu0286at 279.647 kb on - strand, within Atu0286at 279.728 kb on + strand, within Atu0286at 279.753 kb on + strand, within Atu0286at 279.761 kb on - strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.780 kb on - strand, within Atu0286at 279.780 kb on - strand, within Atu0286at 279.780 kb on - strand, within Atu0286at 279.801 kb on + strand, within Atu0286at 279.821 kb on + strand, within Atu0286at 279.857 kb on - strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.901 kb on - strand, within Atu0286at 279.901 kb on - strand, within Atu0286at 279.901 kb on - strand, within Atu0286at 279.911 kb on - strand, within Atu0286at 279.921 kb on - strand, within Atu0286at 280.004 kb on - strand, within Atu0286at 280.142 kb on + strand, within Atu0286at 280.142 kb on + strand, within Atu0286at 280.208 kb on + strand, within Atu0286at 280.230 kb on - strand, within Atu0286at 280.258 kb on + strand, within Atu0286at 280.258 kb on + strand, within Atu0286at 280.266 kb on - strand, within Atu0286at 280.266 kb on - strand, within Atu0286at 280.266 kb on - strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.340 kb on - strand, within Atu0286at 280.340 kb on - strand, within Atu0286at 280.340 kb on - strand, within Atu0286at 280.415 kb on + strand, within Atu0286at 280.421 kb on - strand, within Atu0286at 280.453 kb on - strand, within Atu0286at 280.461 kb on + strand, within Atu0286at 280.500 kb on - strand, within Atu0286at 280.502 kb on + strand, within Atu0286at 280.507 kb on + strandat 280.510 kb on - strandat 280.510 kb on - strandat 280.515 kb on - strandat 280.538 kb on - strandat 280.681 kb on - strandat 280.734 kb on - strandat 280.734 kb on - strandat 280.764 kb on - strandat 280.777 kb on - strand, within Atu0287at 280.815 kb on + strand, within Atu0287at 280.815 kb on + strand, within Atu0287at 280.875 kb on - strand, within Atu0287at 280.896 kb on - strand, within Atu0287at 281.006 kb on + strand, within Atu0287at 281.147 kb on + strand, within Atu0287at 281.147 kb on - strand, within Atu0287at 281.245 kb on + strand, within Atu0287at 281.305 kb on + strand, within Atu0287at 281.305 kb on - strand, within Atu0287at 281.364 kb on - strand, within Atu0287at 281.385 kb on + strand, within Atu0287at 281.407 kb on + strand, within Atu0287at 281.407 kb on + strand, within Atu0287at 281.409 kb on - strand, within Atu0287at 281.446 kb on + strand, within Atu0287at 281.487 kb on + strand, within Atu0287at 281.492 kb on - strand, within Atu0287at 281.496 kb on - strand, within Atu0287at 281.501 kb on - strand, within Atu0287at 281.702 kb on - strand, within Atu0287at 281.746 kb on - strand, within Atu0287at 281.820 kb on - strand, within Atu0287at 281.829 kb on - strand, within Atu0287at 281.945 kb on - strand, within Atu0287at 282.033 kb on + strandat 282.037 kb on - strandat 282.079 kb on + strandat 282.223 kb on - strandat 282.293 kb on + strandat 282.293 kb on + strandat 282.363 kb on - strand, within Atu0288at 282.436 kb on - strand, within Atu0288at 282.464 kb on + strand, within Atu0288at 282.465 kb on - strand, within Atu0288at 282.583 kb on - strand, within Atu0288at 282.628 kb on + strand, within Atu0288at 282.640 kb on + strand, within Atu0288at 282.646 kb on - strand, within Atu0288at 282.669 kb on + strand, within Atu0288at 282.671 kb on + strand, within Atu0288at 282.671 kb on + strand, within Atu0288at 282.671 kb on + strand, within Atu0288at 282.679 kb on - strand, within Atu0288at 282.679 kb on - strand, within Atu0288at 282.679 kb on - strand, within Atu0288at 282.679 kb on - strand, within Atu0288at 282.702 kb on - strand, within Atu0288at 282.727 kb on + strand, within Atu0288at 282.746 kb on + strand, within Atu0288at 282.754 kb on - strand, within Atu0288at 282.773 kb on + strand, within Atu0288at 282.774 kb on - strand, within Atu0288at 282.774 kb on - strand, within Atu0288at 282.781 kb on - strand, within Atu0288at 282.796 kb on - strand, within Atu0288at 282.875 kb on + strand, within Atu0288at 282.883 kb on - strand, within Atu0288at 282.883 kb on - strand, within Atu0288at 282.900 kb on + strand, within Atu0288at 282.908 kb on - strand, within Atu0288at 282.910 kb on + strand, within Atu0288at 282.910 kb on + strand, within Atu0288at 282.918 kb on - strand, within Atu0288at 282.961 kb on - strand, within Atu0288at 282.967 kb on + strand, within Atu0288at 283.003 kb on - strand, within Atu0288at 283.003 kb on - strand, within Atu0288at 283.013 kb on - strand, within Atu0288at 283.013 kb on - strand, within Atu0288at 283.117 kb on + strand, within Atu0288at 283.132 kb on + strand, within Atu0288at 283.137 kb on + strand, within Atu0288

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_C04
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279,630 - Atu0286 0.12 +0.8
279,647 - Atu0286 0.13 -0.8
279,728 + Atu0286 0.20 +0.0
279,753 + Atu0286 0.23 +0.3
279,761 - Atu0286 0.23 +0.7
279,772 + Atu0286 0.24 +0.0
279,772 + Atu0286 0.24 +0.4
279,772 + Atu0286 0.24 -0.0
279,772 + Atu0286 0.24 +0.6
279,772 + Atu0286 0.24 -0.7
279,772 + Atu0286 0.24 -0.1
279,780 - Atu0286 0.25 -3.2
279,780 - Atu0286 0.25 -0.1
279,780 - Atu0286 0.25 -0.4
279,801 + Atu0286 0.27 +0.1
279,821 + Atu0286 0.29 -0.7
279,857 - Atu0286 0.32 +0.3
279,893 + Atu0286 0.35 +0.7
279,893 + Atu0286 0.35 +0.4
279,893 + Atu0286 0.35 +0.2
279,893 + Atu0286 0.35 -1.8
279,893 + Atu0286 0.35 -1.2
279,893 + Atu0286 0.35 -0.8
279,893 + Atu0286 0.35 +0.1
279,901 - Atu0286 0.36 -0.4
279,901 - Atu0286 0.36 -1.0
279,901 - Atu0286 0.36 -0.2
279,911 - Atu0286 0.37 +0.0
279,921 - Atu0286 0.38 +1.6
280,004 - Atu0286 0.45 -0.5
280,142 + Atu0286 0.57 +0.4
280,142 + Atu0286 0.57 -0.9
280,208 + Atu0286 0.63 +0.6
280,230 - Atu0286 0.65 -1.2
280,258 + Atu0286 0.68 -1.2
280,258 + Atu0286 0.68 +0.6
280,266 - Atu0286 0.68 +0.4
280,266 - Atu0286 0.68 +0.5
280,266 - Atu0286 0.68 +0.2
280,332 + Atu0286 0.74 -0.3
280,332 + Atu0286 0.74 -0.5
280,332 + Atu0286 0.74 -0.3
280,332 + Atu0286 0.74 -2.3
280,332 + Atu0286 0.74 +0.6
280,332 + Atu0286 0.74 +0.3
280,340 - Atu0286 0.75 -0.7
280,340 - Atu0286 0.75 -0.4
280,340 - Atu0286 0.75 -0.8
280,415 + Atu0286 0.82 -0.5
280,421 - Atu0286 0.82 -0.6
280,453 - Atu0286 0.85 -1.8
280,461 + Atu0286 0.86 -1.4
280,500 - Atu0286 0.89 +3.1
280,502 + Atu0286 0.89 -0.4
280,507 + -0.1
280,510 - +0.8
280,510 - +0.7
280,515 - -0.7
280,538 - -0.1
280,681 - -0.3
280,734 - -1.1
280,734 - +0.5
280,764 - -2.0
280,777 - Atu0287 0.10 -0.6
280,815 + Atu0287 0.13 +1.1
280,815 + Atu0287 0.13 +1.9
280,875 - Atu0287 0.17 -0.7
280,896 - Atu0287 0.18 -0.2
281,006 + Atu0287 0.25 -0.5
281,147 + Atu0287 0.34 -1.1
281,147 - Atu0287 0.34 -1.3
281,245 + Atu0287 0.41 +0.7
281,305 + Atu0287 0.44 -0.1
281,305 - Atu0287 0.44 -0.4
281,364 - Atu0287 0.48 -0.9
281,385 + Atu0287 0.50 +1.2
281,407 + Atu0287 0.51 -0.2
281,407 + Atu0287 0.51 -1.0
281,409 - Atu0287 0.51 -1.9
281,446 + Atu0287 0.54 -1.7
281,487 + Atu0287 0.56 -1.7
281,492 - Atu0287 0.57 -0.9
281,496 - Atu0287 0.57 +0.3
281,501 - Atu0287 0.57 -1.2
281,702 - Atu0287 0.70 +0.1
281,746 - Atu0287 0.73 -0.6
281,820 - Atu0287 0.78 -0.3
281,829 - Atu0287 0.78 +1.6
281,945 - Atu0287 0.86 -1.1
282,033 + -1.6
282,037 - -0.2
282,079 + +0.0
282,223 - -0.1
282,293 + -3.8
282,293 + -0.2
282,363 - Atu0288 0.13 -1.0
282,436 - Atu0288 0.18 -0.6
282,464 + Atu0288 0.21 -0.4
282,465 - Atu0288 0.21 -1.3
282,583 - Atu0288 0.30 -0.6
282,628 + Atu0288 0.33 -1.2
282,640 + Atu0288 0.34 +0.7
282,646 - Atu0288 0.35 -1.4
282,669 + Atu0288 0.37 -0.7
282,671 + Atu0288 0.37 +1.5
282,671 + Atu0288 0.37 +0.2
282,671 + Atu0288 0.37 -0.5
282,679 - Atu0288 0.37 -1.0
282,679 - Atu0288 0.37 +0.6
282,679 - Atu0288 0.37 -2.1
282,679 - Atu0288 0.37 -0.3
282,702 - Atu0288 0.39 -1.0
282,727 + Atu0288 0.41 -0.5
282,746 + Atu0288 0.43 +0.1
282,754 - Atu0288 0.43 -2.1
282,773 + Atu0288 0.45 -1.9
282,774 - Atu0288 0.45 -2.6
282,774 - Atu0288 0.45 -1.5
282,781 - Atu0288 0.45 +0.2
282,796 - Atu0288 0.46 +0.0
282,875 + Atu0288 0.53 -0.0
282,883 - Atu0288 0.53 -1.3
282,883 - Atu0288 0.53 -1.2
282,900 + Atu0288 0.55 -1.8
282,908 - Atu0288 0.55 -3.3
282,910 + Atu0288 0.55 -0.8
282,910 + Atu0288 0.55 +0.1
282,918 - Atu0288 0.56 -0.5
282,961 - Atu0288 0.59 -1.7
282,967 + Atu0288 0.60 -0.4
283,003 - Atu0288 0.63 +0.3
283,003 - Atu0288 0.63 -0.1
283,013 - Atu0288 0.63 +0.3
283,013 - Atu0288 0.63 -1.9
283,117 + Atu0288 0.72 -0.6
283,132 + Atu0288 0.73 -3.1
283,137 + Atu0288 0.73 -0.2

Or see this region's nucleotide sequence