Experiment: AgroPhage_C04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0154 and Atu8116 are separated by 78 nucleotides Atu8116 and Atu0156 are separated by 12 nucleotides Atu0156 and Atu0157 are separated by 146 nucleotides
Atu0154: Atu0154 - hypothetical protein, at 160,901 to 161,539
Atu0154
Atu8116: Atu8116 - hypothetical protein, at 161,618 to 162,136
Atu8116
Atu0156: Atu0156 - hypothetical protein, at 162,149 to 162,859
Atu0156
Atu0157: Atu0157 - ABC transporter, substrate binding protein, at 163,006 to 164,007
Atu0157
Position (kb) 162
163 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 161.162 kb on + strand, within Atu0154 at 161.213 kb on + strand, within Atu0154 at 161.215 kb on - strand, within Atu0154 at 161.304 kb on + strand, within Atu0154 at 161.312 kb on - strand, within Atu0154 at 161.341 kb on + strand, within Atu0154 at 161.376 kb on + strand, within Atu0154 at 161.393 kb on + strand, within Atu0154 at 161.445 kb on - strand, within Atu0154 at 161.583 kb on - strand at 161.583 kb on - strand at 161.583 kb on - strand at 161.583 kb on - strand at 161.598 kb on + strand at 161.606 kb on - strand at 161.606 kb on - strand at 161.653 kb on + strand at 161.710 kb on - strand, within Atu8116 at 161.894 kb on + strand, within Atu8116 at 161.894 kb on + strand, within Atu8116 at 161.902 kb on - strand, within Atu8116 at 161.921 kb on - strand, within Atu8116 at 161.947 kb on + strand, within Atu8116 at 161.955 kb on - strand, within Atu8116 at 161.989 kb on - strand, within Atu8116 at 161.989 kb on - strand, within Atu8116 at 162.175 kb on + strand at 162.220 kb on - strand, within Atu0156 at 162.269 kb on + strand, within Atu0156 at 162.272 kb on - strand, within Atu0156 at 162.349 kb on + strand, within Atu0156 at 162.440 kb on + strand, within Atu0156 at 162.441 kb on + strand, within Atu0156 at 162.711 kb on - strand, within Atu0156 at 162.717 kb on + strand, within Atu0156 at 162.745 kb on + strand, within Atu0156 at 162.753 kb on - strand, within Atu0156 at 162.807 kb on - strand at 162.807 kb on - strand at 162.828 kb on - strand at 162.903 kb on + strand at 162.911 kb on - strand at 163.103 kb on - strand at 163.114 kb on + strand, within Atu0157 at 163.122 kb on - strand, within Atu0157 at 163.143 kb on - strand, within Atu0157 at 163.182 kb on - strand, within Atu0157 at 163.386 kb on - strand, within Atu0157 at 163.406 kb on + strand, within Atu0157 at 163.422 kb on + strand, within Atu0157 at 163.422 kb on + strand, within Atu0157 at 163.428 kb on + strand, within Atu0157 at 163.428 kb on + strand, within Atu0157 at 163.524 kb on - strand, within Atu0157 at 163.532 kb on + strand, within Atu0157 at 163.667 kb on - strand, within Atu0157 at 163.737 kb on + strand, within Atu0157 at 163.757 kb on + strand, within Atu0157 at 163.757 kb on + strand, within Atu0157 at 163.767 kb on + strand, within Atu0157 at 163.767 kb on + strand, within Atu0157 at 163.767 kb on + strand, within Atu0157 at 163.775 kb on - strand, within Atu0157 at 163.775 kb on - strand, within Atu0157
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C04 remove 161,162 + Atu0154 0.41 -0.1 161,213 + Atu0154 0.49 -1.4 161,215 - Atu0154 0.49 -0.2 161,304 + Atu0154 0.63 -0.0 161,312 - Atu0154 0.64 -0.1 161,341 + Atu0154 0.69 +0.1 161,376 + Atu0154 0.74 +2.3 161,393 + Atu0154 0.77 +0.5 161,445 - Atu0154 0.85 -0.2 161,583 - +0.4 161,583 - +0.1 161,583 - +0.4 161,583 - -2.2 161,598 + -0.7 161,606 - +0.2 161,606 - -1.1 161,653 + -0.1 161,710 - Atu8116 0.18 +0.1 161,894 + Atu8116 0.53 -0.4 161,894 + Atu8116 0.53 -0.9 161,902 - Atu8116 0.55 +0.4 161,921 - Atu8116 0.58 +0.2 161,947 + Atu8116 0.63 +0.2 161,955 - Atu8116 0.65 +0.9 161,989 - Atu8116 0.71 +0.2 161,989 - Atu8116 0.71 -1.3 162,175 + -0.4 162,220 - Atu0156 0.10 -1.4 162,269 + Atu0156 0.17 +2.9 162,272 - Atu0156 0.17 -0.8 162,349 + Atu0156 0.28 -0.9 162,440 + Atu0156 0.41 -0.8 162,441 + Atu0156 0.41 -1.3 162,711 - Atu0156 0.79 +0.0 162,717 + Atu0156 0.80 -0.2 162,745 + Atu0156 0.84 -1.0 162,753 - Atu0156 0.85 -1.0 162,807 - -0.4 162,807 - -1.5 162,828 - -0.3 162,903 + -0.2 162,911 - -1.4 163,103 - -0.2 163,114 + Atu0157 0.11 +0.9 163,122 - Atu0157 0.12 +0.2 163,143 - Atu0157 0.14 -0.7 163,182 - Atu0157 0.18 -1.2 163,386 - Atu0157 0.38 +0.4 163,406 + Atu0157 0.40 -1.1 163,422 + Atu0157 0.42 -0.6 163,422 + Atu0157 0.42 +1.0 163,428 + Atu0157 0.42 -0.7 163,428 + Atu0157 0.42 +0.4 163,524 - Atu0157 0.52 +0.1 163,532 + Atu0157 0.52 +0.3 163,667 - Atu0157 0.66 +0.2 163,737 + Atu0157 0.73 -0.1 163,757 + Atu0157 0.75 +0.8 163,757 + Atu0157 0.75 -0.4 163,767 + Atu0157 0.76 -0.3 163,767 + Atu0157 0.76 -0.1 163,767 + Atu0157 0.76 -1.5 163,775 - Atu0157 0.77 -0.5 163,775 - Atu0157 0.77 +0.8
Or see this region's nucleotide sequence