Experiment: AgroPhage_C04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0151 and Atu0152 are separated by 70 nucleotides Atu0152 and Atu0153 overlap by 11 nucleotides Atu0153 and Atu0154 are separated by 75 nucleotides Atu0154 and Atu8116 are separated by 78 nucleotides Atu8116 and Atu0156 are separated by 12 nucleotides
Atu0151: Atu0151 - D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase, at 159,573 to 160,088
Atu0151
Atu0152: Atu0152 - hypothetical protein, at 160,159 to 160,416
Atu0152
Atu0153: Atu0153 - transcriptional regulator, Fur family, at 160,406 to 160,825
Atu0153
Atu0154: Atu0154 - hypothetical protein, at 160,901 to 161,539
Atu0154
Atu8116: Atu8116 - hypothetical protein, at 161,618 to 162,136
Atu8116
Atu0156: Atu0156 - hypothetical protein, at 162,149 to 162,859
Atu0156
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 160.217 kb on + strand, within Atu0152 at 160.329 kb on - strand, within Atu0152 at 160.429 kb on - strand at 160.442 kb on - strand at 160.447 kb on - strand at 160.457 kb on - strand, within Atu0153 at 160.481 kb on + strand, within Atu0153 at 160.481 kb on + strand, within Atu0153 at 160.583 kb on + strand, within Atu0153 at 160.591 kb on - strand, within Atu0153 at 160.670 kb on - strand, within Atu0153 at 160.761 kb on + strand, within Atu0153 at 160.904 kb on - strand at 160.940 kb on - strand at 160.956 kb on - strand at 161.022 kb on + strand, within Atu0154 at 161.022 kb on + strand, within Atu0154 at 161.030 kb on - strand, within Atu0154 at 161.067 kb on - strand, within Atu0154 at 161.069 kb on + strand, within Atu0154 at 161.069 kb on + strand, within Atu0154 at 161.077 kb on - strand, within Atu0154 at 161.077 kb on - strand, within Atu0154 at 161.105 kb on + strand, within Atu0154 at 161.113 kb on - strand, within Atu0154 at 161.162 kb on + strand, within Atu0154 at 161.213 kb on + strand, within Atu0154 at 161.215 kb on - strand, within Atu0154 at 161.304 kb on + strand, within Atu0154 at 161.312 kb on - strand, within Atu0154 at 161.341 kb on + strand, within Atu0154 at 161.376 kb on + strand, within Atu0154 at 161.393 kb on + strand, within Atu0154 at 161.445 kb on - strand, within Atu0154 at 161.583 kb on - strand at 161.583 kb on - strand at 161.583 kb on - strand at 161.583 kb on - strand at 161.598 kb on + strand at 161.606 kb on - strand at 161.606 kb on - strand at 161.653 kb on + strand at 161.710 kb on - strand, within Atu8116 at 161.894 kb on + strand, within Atu8116 at 161.894 kb on + strand, within Atu8116 at 161.902 kb on - strand, within Atu8116 at 161.921 kb on - strand, within Atu8116 at 161.947 kb on + strand, within Atu8116 at 161.955 kb on - strand, within Atu8116 at 161.989 kb on - strand, within Atu8116 at 161.989 kb on - strand, within Atu8116 at 162.175 kb on + strand at 162.220 kb on - strand, within Atu0156 at 162.269 kb on + strand, within Atu0156 at 162.272 kb on - strand, within Atu0156 at 162.349 kb on + strand, within Atu0156 at 162.440 kb on + strand, within Atu0156 at 162.441 kb on + strand, within Atu0156
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_C04 remove 160,217 + Atu0152 0.22 -2.1 160,329 - Atu0152 0.66 -2.7 160,429 - +0.2 160,442 - +3.1 160,447 - +0.9 160,457 - Atu0153 0.12 -1.7 160,481 + Atu0153 0.18 +1.4 160,481 + Atu0153 0.18 +2.5 160,583 + Atu0153 0.42 -0.2 160,591 - Atu0153 0.44 +1.1 160,670 - Atu0153 0.63 -1.2 160,761 + Atu0153 0.85 -0.3 160,904 - -0.2 160,940 - +1.4 160,956 - -1.2 161,022 + Atu0154 0.19 +1.0 161,022 + Atu0154 0.19 -0.2 161,030 - Atu0154 0.20 -1.5 161,067 - Atu0154 0.26 -0.5 161,069 + Atu0154 0.26 -0.4 161,069 + Atu0154 0.26 +1.3 161,077 - Atu0154 0.28 +0.2 161,077 - Atu0154 0.28 -0.2 161,105 + Atu0154 0.32 -1.8 161,113 - Atu0154 0.33 -0.3 161,162 + Atu0154 0.41 -0.1 161,213 + Atu0154 0.49 -1.4 161,215 - Atu0154 0.49 -0.2 161,304 + Atu0154 0.63 -0.0 161,312 - Atu0154 0.64 -0.1 161,341 + Atu0154 0.69 +0.1 161,376 + Atu0154 0.74 +2.3 161,393 + Atu0154 0.77 +0.5 161,445 - Atu0154 0.85 -0.2 161,583 - +0.4 161,583 - +0.1 161,583 - +0.4 161,583 - -2.2 161,598 + -0.7 161,606 - +0.2 161,606 - -1.1 161,653 + -0.1 161,710 - Atu8116 0.18 +0.1 161,894 + Atu8116 0.53 -0.4 161,894 + Atu8116 0.53 -0.9 161,902 - Atu8116 0.55 +0.4 161,921 - Atu8116 0.58 +0.2 161,947 + Atu8116 0.63 +0.2 161,955 - Atu8116 0.65 +0.9 161,989 - Atu8116 0.71 +0.2 161,989 - Atu8116 0.71 -1.3 162,175 + -0.4 162,220 - Atu0156 0.10 -1.4 162,269 + Atu0156 0.17 +2.9 162,272 - Atu0156 0.17 -0.8 162,349 + Atu0156 0.28 -0.9 162,440 + Atu0156 0.41 -0.8 162,441 + Atu0156 0.41 -1.3
Or see this region's nucleotide sequence