Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0999 and Atu1000 are separated by 286 nucleotides Atu1000 and Atu1001 are separated by 394 nucleotides
Atu0999: Atu0999 - magnesium transport protein, at 995,102 to 996,475
Atu0999
Atu1000: Atu1000 - MFS permease, at 996,762 to 997,847
Atu1000
Atu1001: Atu1001 - hypothetical protein, at 998,242 to 999,150
Atu1001
Position (kb) 996
997
998 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 995.804 kb on + strand, within Atu0999 at 995.851 kb on + strand, within Atu0999 at 995.851 kb on + strand, within Atu0999 at 995.908 kb on - strand, within Atu0999 at 995.984 kb on + strand, within Atu0999 at 996.032 kb on + strand, within Atu0999 at 996.040 kb on - strand, within Atu0999 at 996.040 kb on - strand, within Atu0999 at 996.247 kb on + strand, within Atu0999 at 996.289 kb on - strand, within Atu0999 at 996.297 kb on - strand, within Atu0999 at 996.369 kb on + strand at 996.369 kb on + strand at 996.377 kb on - strand at 996.462 kb on + strand at 996.470 kb on - strand at 996.535 kb on + strand at 996.596 kb on + strand at 996.641 kb on - strand at 996.713 kb on + strand at 996.731 kb on - strand at 996.788 kb on - strand at 996.840 kb on + strand at 996.848 kb on - strand at 996.848 kb on - strand at 996.858 kb on - strand at 996.893 kb on + strand, within Atu1000 at 996.901 kb on - strand, within Atu1000 at 996.918 kb on + strand, within Atu1000 at 996.987 kb on + strand, within Atu1000 at 997.086 kb on - strand, within Atu1000 at 997.091 kb on - strand, within Atu1000 at 997.098 kb on + strand, within Atu1000 at 997.142 kb on + strand, within Atu1000 at 997.221 kb on + strand, within Atu1000 at 997.242 kb on - strand, within Atu1000 at 997.252 kb on + strand, within Atu1000 at 997.314 kb on - strand, within Atu1000 at 997.357 kb on - strand, within Atu1000 at 997.402 kb on + strand, within Atu1000 at 997.402 kb on + strand, within Atu1000 at 997.410 kb on - strand, within Atu1000 at 997.449 kb on + strand, within Atu1000 at 997.449 kb on + strand, within Atu1000 at 997.452 kb on - strand, within Atu1000 at 997.457 kb on - strand, within Atu1000 at 997.493 kb on + strand, within Atu1000 at 997.516 kb on - strand, within Atu1000 at 997.540 kb on + strand, within Atu1000 at 997.542 kb on + strand, within Atu1000 at 997.563 kb on - strand, within Atu1000 at 997.628 kb on + strand, within Atu1000 at 997.636 kb on - strand, within Atu1000 at 997.897 kb on + strand at 997.930 kb on - strand at 997.930 kb on - strand at 997.947 kb on + strand at 997.965 kb on + strand at 997.967 kb on + strand at 998.063 kb on + strand at 998.326 kb on + strand at 998.334 kb on - strand, within Atu1001 at 998.357 kb on + strand, within Atu1001 at 998.358 kb on - strand, within Atu1001 at 998.384 kb on - strand, within Atu1001 at 998.407 kb on - strand, within Atu1001 at 998.477 kb on + strand, within Atu1001 at 998.481 kb on - strand, within Atu1001 at 998.509 kb on - strand, within Atu1001 at 998.540 kb on + strand, within Atu1001 at 998.579 kb on - strand, within Atu1001 at 998.740 kb on + strand, within Atu1001
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 995,804 + Atu0999 0.51 -1.4 995,851 + Atu0999 0.55 -2.0 995,851 + Atu0999 0.55 -0.4 995,908 - Atu0999 0.59 +0.4 995,984 + Atu0999 0.64 -1.8 996,032 + Atu0999 0.68 -0.0 996,040 - Atu0999 0.68 +0.6 996,040 - Atu0999 0.68 -1.2 996,247 + Atu0999 0.83 +0.5 996,289 - Atu0999 0.86 -1.8 996,297 - Atu0999 0.87 -1.0 996,369 + +0.0 996,369 + +0.4 996,377 - +0.9 996,462 + -1.2 996,470 - +0.1 996,535 + -0.9 996,596 + -0.9 996,641 - -1.2 996,713 + +0.5 996,731 - +0.2 996,788 - +1.4 996,840 + +0.5 996,848 - -0.2 996,848 - -1.6 996,858 - +0.2 996,893 + Atu1000 0.12 -0.2 996,901 - Atu1000 0.13 +0.2 996,918 + Atu1000 0.14 -0.2 996,987 + Atu1000 0.21 +0.7 997,086 - Atu1000 0.30 -0.5 997,091 - Atu1000 0.30 -0.3 997,098 + Atu1000 0.31 +3.2 997,142 + Atu1000 0.35 +1.6 997,221 + Atu1000 0.42 +0.8 997,242 - Atu1000 0.44 -1.0 997,252 + Atu1000 0.45 -0.2 997,314 - Atu1000 0.51 +1.5 997,357 - Atu1000 0.55 -0.7 997,402 + Atu1000 0.59 +0.6 997,402 + Atu1000 0.59 +1.2 997,410 - Atu1000 0.60 +0.8 997,449 + Atu1000 0.63 +0.6 997,449 + Atu1000 0.63 -0.8 997,452 - Atu1000 0.64 +0.2 997,457 - Atu1000 0.64 +0.3 997,493 + Atu1000 0.67 -0.3 997,516 - Atu1000 0.69 +0.2 997,540 + Atu1000 0.72 +1.6 997,542 + Atu1000 0.72 +0.3 997,563 - Atu1000 0.74 +1.2 997,628 + Atu1000 0.80 -0.2 997,636 - Atu1000 0.80 +0.2 997,897 + +1.0 997,930 - +1.7 997,930 - +0.4 997,947 + +0.0 997,965 + -0.5 997,967 + -1.0 998,063 + +0.8 998,326 + +0.3 998,334 - Atu1001 0.10 -0.8 998,357 + Atu1001 0.13 +0.0 998,358 - Atu1001 0.13 -0.6 998,384 - Atu1001 0.16 +0.3 998,407 - Atu1001 0.18 -0.6 998,477 + Atu1001 0.26 +0.5 998,481 - Atu1001 0.26 -2.4 998,509 - Atu1001 0.29 +0.2 998,540 + Atu1001 0.33 -0.7 998,579 - Atu1001 0.37 -0.3 998,740 + Atu1001 0.55 -0.7
Or see this region's nucleotide sequence