Experiment: No phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0299 and Atu0300 are separated by 96 nucleotides Atu0300 and Atu0301 are separated by 193 nucleotides Atu0301 and Atu0302 are separated by 264 nucleotides
Atu0299: Atu0299 - hypothetical protein, at 292,277 to 292,873
Atu0299
Atu0300: Atu0300 - methyltransferase, at 292,970 to 293,563
Atu0300
Atu0301: Atu0301 - DNA polymerase III, beta chain, at 293,757 to 294,875
Atu0301
Atu0302: Atu0302 - tetrapyrrole methylase family protein, at 295,140 to 296,081
Atu0302
Position (kb) 293
294
295 Strain fitness (log2 ratio) -2
-1
0
1
2 at 292.757 kb on + strand, within Atu0299 at 292.825 kb on - strand at 292.836 kb on + strand at 292.842 kb on + strand at 292.852 kb on + strand at 292.862 kb on - strand at 292.910 kb on - strand at 292.910 kb on - strand at 292.986 kb on + strand at 293.054 kb on - strand, within Atu0300 at 293.108 kb on - strand, within Atu0300 at 293.186 kb on + strand, within Atu0300 at 293.193 kb on - strand, within Atu0300 at 293.201 kb on + strand, within Atu0300 at 293.208 kb on + strand, within Atu0300 at 293.216 kb on - strand, within Atu0300 at 293.285 kb on - strand, within Atu0300 at 293.302 kb on - strand, within Atu0300 at 293.330 kb on + strand, within Atu0300 at 293.366 kb on + strand, within Atu0300 at 293.492 kb on + strand, within Atu0300 at 293.545 kb on + strand at 293.553 kb on - strand at 293.553 kb on - strand at 295.041 kb on - strand at 295.043 kb on + strand at 295.232 kb on - strand at 295.274 kb on - strand, within Atu0302 at 295.415 kb on - strand, within Atu0302 at 295.431 kb on + strand, within Atu0302 at 295.440 kb on - strand, within Atu0302 at 295.447 kb on - strand, within Atu0302 at 295.545 kb on + strand, within Atu0302 at 295.547 kb on - strand, within Atu0302 at 295.566 kb on + strand, within Atu0302 at 295.576 kb on + strand, within Atu0302 at 295.576 kb on + strand, within Atu0302 at 295.584 kb on - strand, within Atu0302 at 295.584 kb on - strand, within Atu0302 at 295.603 kb on + strand, within Atu0302 at 295.631 kb on - strand, within Atu0302 at 295.699 kb on + strand, within Atu0302 at 295.712 kb on - strand, within Atu0302 at 295.756 kb on + strand, within Atu0302 at 295.756 kb on + strand, within Atu0302 at 295.795 kb on + strand, within Atu0302 at 295.803 kb on - strand, within Atu0302 at 295.803 kb on - strand, within Atu0302
Per-strain Table
Position Strand Gene LocusTag Fraction No phage control remove 292,757 + Atu0299 0.80 -0.2 292,825 - +1.5 292,836 + -0.1 292,842 + -0.4 292,852 + +0.5 292,862 - +0.8 292,910 - +0.3 292,910 - +0.6 292,986 + -0.3 293,054 - Atu0300 0.14 -0.6 293,108 - Atu0300 0.23 -0.7 293,186 + Atu0300 0.36 +0.7 293,193 - Atu0300 0.38 -0.7 293,201 + Atu0300 0.39 +0.3 293,208 + Atu0300 0.40 +1.7 293,216 - Atu0300 0.41 +1.9 293,285 - Atu0300 0.53 -0.1 293,302 - Atu0300 0.56 +1.2 293,330 + Atu0300 0.61 -0.1 293,366 + Atu0300 0.67 +0.7 293,492 + Atu0300 0.88 +1.0 293,545 + -0.1 293,553 - -1.3 293,553 - -2.6 295,041 - +1.0 295,043 + -0.9 295,232 - +0.3 295,274 - Atu0302 0.14 -0.2 295,415 - Atu0302 0.29 -0.1 295,431 + Atu0302 0.31 -0.4 295,440 - Atu0302 0.32 -0.4 295,447 - Atu0302 0.33 +1.1 295,545 + Atu0302 0.43 -1.5 295,547 - Atu0302 0.43 +1.0 295,566 + Atu0302 0.45 +1.5 295,576 + Atu0302 0.46 +0.7 295,576 + Atu0302 0.46 +1.9 295,584 - Atu0302 0.47 +0.3 295,584 - Atu0302 0.47 -1.0 295,603 + Atu0302 0.49 +0.2 295,631 - Atu0302 0.52 +0.1 295,699 + Atu0302 0.59 +0.4 295,712 - Atu0302 0.61 -0.2 295,756 + Atu0302 0.65 +0.2 295,756 + Atu0302 0.65 +0.4 295,795 + Atu0302 0.70 +0.4 295,803 - Atu0302 0.70 -1.4 295,803 - Atu0302 0.70 -0.7
Or see this region's nucleotide sequence