Experiment: AgroPhage_B07
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3163 and Atu3164 are separated by 16 nucleotides Atu3164 and Atu3165 are separated by 259 nucleotides
Atu3163: Atu3163 - zinc-binding dehydrogenase, at 172,147 to 173,157
Atu3163
Atu3164: Atu3164 - sorbitol dehydrogenase, at 173,174 to 173,944
Atu3164
Atu3165: Atu3165 - sorbitol/mannitol ABC transporter substrate-binding protein, at 174,204 to 175,457
Atu3165
Position (kb) 173
174 Strain fitness (log2 ratio) -2
-1
0
1
2 at 172.396 kb on + strand, within Atu3163 at 172.396 kb on + strand, within Atu3163 at 172.404 kb on - strand, within Atu3163 at 172.516 kb on + strand, within Atu3163 at 172.663 kb on + strand, within Atu3163 at 172.751 kb on - strand, within Atu3163 at 172.785 kb on - strand, within Atu3163 at 172.801 kb on - strand, within Atu3163 at 172.854 kb on - strand, within Atu3163 at 172.885 kb on + strand, within Atu3163 at 172.889 kb on + strand, within Atu3163 at 172.928 kb on + strand, within Atu3163 at 172.928 kb on + strand, within Atu3163 at 172.958 kb on + strand, within Atu3163 at 173.006 kb on - strand, within Atu3163 at 173.031 kb on + strand, within Atu3163 at 173.052 kb on + strand, within Atu3163 at 173.060 kb on + strand at 173.060 kb on + strand at 173.060 kb on + strand at 173.068 kb on - strand at 173.068 kb on - strand at 173.188 kb on - strand at 173.231 kb on + strand at 173.251 kb on - strand, within Atu3164 at 173.301 kb on + strand, within Atu3164 at 173.309 kb on - strand, within Atu3164 at 173.396 kb on + strand, within Atu3164 at 173.401 kb on + strand, within Atu3164 at 173.574 kb on + strand, within Atu3164 at 173.608 kb on - strand, within Atu3164 at 173.747 kb on + strand, within Atu3164 at 173.775 kb on - strand, within Atu3164 at 173.776 kb on - strand, within Atu3164 at 173.793 kb on + strand, within Atu3164 at 173.925 kb on + strand at 173.933 kb on - strand at 173.941 kb on - strand at 174.021 kb on - strand at 174.023 kb on - strand at 174.023 kb on - strand at 174.117 kb on + strand at 174.159 kb on - strand at 174.225 kb on + strand at 174.234 kb on + strand at 174.367 kb on + strand, within Atu3165 at 174.375 kb on - strand, within Atu3165 at 174.375 kb on - strand, within Atu3165 at 174.401 kb on + strand, within Atu3165 at 174.503 kb on - strand, within Atu3165 at 174.521 kb on + strand, within Atu3165 at 174.540 kb on + strand, within Atu3165 at 174.587 kb on + strand, within Atu3165 at 174.605 kb on - strand, within Atu3165 at 174.620 kb on - strand, within Atu3165 at 174.657 kb on - strand, within Atu3165 at 174.696 kb on - strand, within Atu3165 at 174.770 kb on - strand, within Atu3165 at 174.868 kb on + strand, within Atu3165 at 174.883 kb on + strand, within Atu3165
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_B07 remove 172,396 + Atu3163 0.25 -1.5 172,396 + Atu3163 0.25 -1.1 172,404 - Atu3163 0.25 -0.9 172,516 + Atu3163 0.36 +0.9 172,663 + Atu3163 0.51 -1.2 172,751 - Atu3163 0.60 -0.8 172,785 - Atu3163 0.63 -0.8 172,801 - Atu3163 0.65 -0.6 172,854 - Atu3163 0.70 -0.0 172,885 + Atu3163 0.73 -0.2 172,889 + Atu3163 0.73 -0.3 172,928 + Atu3163 0.77 +2.7 172,928 + Atu3163 0.77 -0.0 172,958 + Atu3163 0.80 -0.9 173,006 - Atu3163 0.85 -1.4 173,031 + Atu3163 0.87 -0.0 173,052 + Atu3163 0.90 -1.0 173,060 + -1.0 173,060 + +0.8 173,060 + +0.6 173,068 - -1.9 173,068 - +0.4 173,188 - -0.2 173,231 + +1.9 173,251 - Atu3164 0.10 -0.4 173,301 + Atu3164 0.16 -2.3 173,309 - Atu3164 0.18 -0.1 173,396 + Atu3164 0.29 -0.6 173,401 + Atu3164 0.29 -0.9 173,574 + Atu3164 0.52 +0.6 173,608 - Atu3164 0.56 +1.1 173,747 + Atu3164 0.74 -0.6 173,775 - Atu3164 0.78 -0.6 173,776 - Atu3164 0.78 -1.4 173,793 + Atu3164 0.80 +1.1 173,925 + -0.4 173,933 - -0.7 173,941 - -0.4 174,021 - -1.5 174,023 - +1.2 174,023 - +0.5 174,117 + +0.1 174,159 - -0.5 174,225 + -2.6 174,234 + -0.5 174,367 + Atu3165 0.13 -2.2 174,375 - Atu3165 0.14 -0.4 174,375 - Atu3165 0.14 -0.3 174,401 + Atu3165 0.16 -2.5 174,503 - Atu3165 0.24 +1.6 174,521 + Atu3165 0.25 +0.6 174,540 + Atu3165 0.27 +1.0 174,587 + Atu3165 0.31 +1.8 174,605 - Atu3165 0.32 -0.2 174,620 - Atu3165 0.33 -1.4 174,657 - Atu3165 0.36 -0.2 174,696 - Atu3165 0.39 +1.1 174,770 - Atu3165 0.45 -1.9 174,868 + Atu3165 0.53 +0.2 174,883 + Atu3165 0.54 +0.4
Or see this region's nucleotide sequence